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ensembl-gh-mirror
ensembl
Commits
0f2978c5
Commit
0f2978c5
authored
Feb 05, 2008
by
Andreas Kusalananda Kähäri
Browse files
The binning methods 'frational_count' and 'weight' are the same.
parent
cd2e79ad
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3 deletions
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-3
modules/Bio/EnsEMBL/Collection.pm
modules/Bio/EnsEMBL/Collection.pm
+3
-3
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modules/Bio/EnsEMBL/Collection.pm
View file @
0f2978c5
...
@@ -190,7 +190,7 @@ Returns an array of bins, each bin containing an array of entries
...
@@ -190,7 +190,7 @@ Returns an array of bins, each bin containing an array of entries
method) allocated to that bin. The 'entry' binning method is equivalent
method) allocated to that bin. The 'entry' binning method is equivalent
to 'entries'.
to 'entries'.
=item 'fractional_count' and '
fcoun
t'
=item 'fractional_count' and '
weigh
t'
Returns an array of bins, each bin containing the sum of the fractions
Returns an array of bins, each bin containing the sum of the fractions
of features overlapping that bin. A feature fully inside a bin will
of features overlapping that bin. A feature fully inside a bin will
...
@@ -257,7 +257,7 @@ our %VALID_BINNING_METHODS = (
...
@@ -257,7 +257,7 @@ our %VALID_BINNING_METHODS = (
'
entries
'
=>
2
,
'
entries
'
=>
2
,
'
entry
'
=>
2
,
# Same as 'entries'.
'
entry
'
=>
2
,
# Same as 'entries'.
'
fractional_count
'
=>
3
,
'
fractional_count
'
=>
3
,
'
fcoun
t
'
=>
3
,
# Same as 'fractional_count'.
'
weigh
t
'
=>
3
,
# Same as 'fractional_count'.
'
coverage
'
=>
4
);
'
coverage
'
=>
4
);
=head1 METHODS (constructor)
=head1 METHODS (constructor)
...
@@ -771,7 +771,7 @@ sub get_bins {
...
@@ -771,7 +771,7 @@ sub get_bins {
}
elsif
(
$method
==
3
)
{
}
elsif
(
$method
==
3
)
{
# For 'fractional_count' and '
fcoun
t'.
# For 'fractional_count' and '
weigh
t'.
if
(
$start_bin
==
$end_bin
)
{
if
(
$start_bin
==
$end_bin
)
{
++
$bins
[
$start_bin
];
++
$bins
[
$start_bin
];
...
...
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