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Commit 0f7a8022 authored by Simon White's avatar Simon White
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Added an attrib type to define alternate three prime ends on a transcript

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misc-scripts/attribute_types/attrib_type.txt
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...@@ -338,6 +338,9 @@ ...@@ -338,6 +338,9 @@
# Intron loss due to a frameshift on the query genome # Intron loss due to a frameshift on the query genome
198 lost_frameshift lost_frameshift Frameshift on the query sequence is lost in the target sequence 198 lost_frameshift lost_frameshift Frameshift on the query sequence is lost in the target sequence
# Transcript attribute to identify alternate three prime ends
199 AltThreePrime Alternate three prime end The position of other possible three prime ends for the transcript
#ÊAttributes added as gene_attribs to Ensembl genes that fall within a genomic region where a LRG record exists #ÊAttributes added as gene_attribs to Ensembl genes that fall within a genomic region where a LRG record exists
216 GeneInLRG Gene in LRG This gene is contained within an LRG region 216 GeneInLRG Gene in LRG This gene is contained within an LRG region
217 GeneOverlapLRG Gene overlaps LRG This gene is partially overlapped by a LRG region (start or end outside LRG) 217 GeneOverlapLRG Gene overlaps LRG This gene is partially overlapped by a LRG region (start or end outside LRG)
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