From 11a28d6ccd397a45917aa54faf57a0378ef3409f Mon Sep 17 00:00:00 2001
From: Daniel Sobral <ds19@sanger.ac.uk>
Date: Wed, 9 Mar 2011 17:45:27 +0000
Subject: [PATCH] Added a couple of biotypes to the list.
---
misc-scripts/density_feature/seq_region_stats.pl | 10 ++++++++++
1 file changed, 10 insertions(+)
diff --git a/misc-scripts/density_feature/seq_region_stats.pl b/misc-scripts/density_feature/seq_region_stats.pl
index 931c3b23bf..1a4ea62139 100644
--- a/misc-scripts/density_feature/seq_region_stats.pl
+++ b/misc-scripts/density_feature/seq_region_stats.pl
@@ -35,6 +35,7 @@ my %attrib_codes = ( 'miRNA' => 'miRNA',
'Mt_tRNA' => 'MTtRNA',
'Mt_rRNA' => 'MTrRNA',
'ncRNA' => 'ncRNA',
+ 'polymorphic_pseudogene' => 'pseudo',
'havana_pseudogene' => 'pseudo',
'processed_pseudogene' => 'pseudo',
'unprocessed_pseudogene' => 'pseudo',
@@ -52,11 +53,20 @@ my %attrib_codes = ( 'miRNA' => 'miRNA',
'IG_J_gene' => 'Ig',
'IG_D_gene' => 'Ig',
'IG_C_gene' => 'Ig',
+ 'IG_Z_gene' => 'Ig',
+ 'IG_M_gene' => 'Ig',
+ 'TR_C_gene' => 'Ig', #Actually it is TR but was put with Igs (v62)
+ 'TR_J_gene' => 'Ig', #Actually it is TR but was put with Igs (v62)
+ 'TR_V_gene' => 'Ig', #Actually it is TR but was put with Igs (v62)
'C_segment' => 'Ig',
'D_segment' => 'Ig',
'J_segment' => 'Ig',
'V_segment' => 'Ig',
'IG_pseudogene' => 'pseudo',
+ 'IG_V_pseudogene' => 'pseudo',
+ 'IG_C_pseudogene' => 'pseudo',
+ 'TR_V_pseudogene' => 'pseudo',
+ 'IG_J_pseudogene' => 'pseudo',
'retrotransposed' => 'rettran',
'processed_transcript' => 'proc_tr',
'lincRNA' => 'lincRNA',);
--
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