diff --git a/misc-scripts/analysis_description/analysis.descriptions b/misc-scripts/analysis_description/analysis.descriptions index 910a7f375c4793bf401f6a9958f9b291ed1447c9..2ff7b6df60731df3f16fdf0362727933316ffa5c 100644 --- a/misc-scripts/analysis_description/analysis.descriptions +++ b/misc-scripts/analysis_description/analysis.descriptions @@ -105,7 +105,6 @@ 1 chimp_gap_genes Pan troglodytes genes modelled from the projection of human genes using WGA2Genes code. 1 chimp_genes Pan troglodytes genes modelled from exonerate human genes in regions where no projection was obtained. Model obtained using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) 1 chimp_human_protein Human protein sequence aligned to the chimp genome by projection or by using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) -1 chimp_est Pan troglodytes ESTs from dbEST aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) 1 chimp_protein Pan troglodyes protein sequences from Swiss-Prot/TrEMBL and RefSeq aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95) 1 cint_cdna Ciona intestinalis full insert sequences of cDNA clones from Ghost Database (http://ghost.zool.kyoto-u.ac.jp/indexr1.html) aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) 1 cint_est Ciona intestinalis ESTs from dbEST and GHOST aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) @@ -178,6 +177,7 @@ 1 other_protein Uniprot proteins aligned to the genome with GeneWise (E.Birney et al., Genome Res. 2004 14:988-95) 1 other_proteins Uniprot proteins aligned to the genome with GeneWise (E.Birney et al., Genome Res. 2004 14:988-95) 1 pfscan Hits to the PROSITE profiles database (protein family/domain models based on weight matrices; N. Hulu et al., Nuc. Acids. Res. 2004 32:D134-7). Part of the Interpro consortium (http://www.ebi.ac.uk/interpro/) +1 pmatch Richard Durbin's very fast identical protein search tool used as part of the EnsEMBL genome annotation pipeline. It is unpublished software, available from the Sanger Centre CVS. 1 protein_binding_site Feature imported from FlyBase (http://www.flybase.org) 1 protein_exonerate Proteins are mapped on the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) 1 qtl Quantitative Trait Loci (QTL) features. @@ -213,7 +213,6 @@ 1 platypus_cdna Platypus cDNAs from RefSeq and EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) 1 platypus_est Platypus ESTs from EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) 1 platypus_protein Platypus proteins from Swiss-Prot/TrEMBL aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95) -1 oxford_FGU Gene predictions generated by Chris Pointing's group at the FGU in Oxford using exonerate 1 platypus_454_cdna Platypus cDNAs assembly from 454 reads aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) 1 horse_cdna Horse cDNAs from RefSeq and EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) 1 horse_est Horse ESTs from dbEST aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)