From 12a2fda4491f63158d51899ecb2f3450cd9844e9 Mon Sep 17 00:00:00 2001
From: Monika Komorowska <mk8@sanger.ac.uk>
Date: Tue, 31 Jul 2012 09:13:30 +0000
Subject: [PATCH] added tables display_xref_priority and gene_desc_priority -
they are used in DisplayXrefs.pm
http://www.ebi.ac.uk/panda/jira/browse/ENSCORESW-219
---
misc-scripts/xref_mapping/sql/table.sql | 32 +++++++++++++++++++++----
1 file changed, 28 insertions(+), 4 deletions(-)
diff --git a/misc-scripts/xref_mapping/sql/table.sql b/misc-scripts/xref_mapping/sql/table.sql
index eb46d8728d..b4a7c5eb3a 100755
--- a/misc-scripts/xref_mapping/sql/table.sql
+++ b/misc-scripts/xref_mapping/sql/table.sql
@@ -243,6 +243,7 @@ CREATE TABLE checksum_xref (
INDEX checksum_idx(checksum(10))
) COLLATE=latin1_swedish_ci ENGINE=MyISAM;
+
################################################################################
################################################################################
@@ -305,10 +306,10 @@ CREATE TABLE havana_status (
) COLLATE=latin1_swedish_ci ENGINE=InnoDB;
-#
-# Try to keep the status in the correct order
-# it will make it easier to see what is happening
-#
+
+-- Try to keep the status in the correct order
+-- it will make it easier to see what is happening
+
CREATE TABLE process_status (
id INT(10) UNSIGNED NOT NULL AUTO_INCREMENT,
@@ -328,6 +329,29 @@ CREATE TABLE process_status (
) COLLATE=latin1_swedish_ci ENGINE=InnoDB;
+--This table is populated in DisplayXrefs.pm and is used to set the best xrefs as
+--display xrefs for genes and transcripts
+
+
+
+CREATE TABLE display_xref_priority(
+ ensembl_object_type VARCHAR(100),
+ source_id INT UNSIGNED NOT NULL,
+ priority SMALLINT UNSIGNED NOT NULL,
+
+ PRIMARY KEY (ensembl_object_type, source_id)
+) COLLATE=latin1_swedish_ci ENGINE=InnoDB;
+
+
+--This table is populated in DisplayXrefs.pm and is used to set
+--gene descriptions
+
+CREATE TABLE gene_desc_priority(
+ source_id INT UNSIGNED NOT NULL,
+ priority SMALLINT UNSIGNED NOT NULL,
+
+ PRIMARY KEY (source_id)
+) COLLATE=latin1_swedish_ci ENGINE=InnoDB;
################################################################################
--
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