diff --git a/misc-scripts/analysis_description/analysis.descriptions b/misc-scripts/analysis_description/analysis.descriptions
index f969913252c83a9f50c2ba8b783efd4e6defea64..b6ed48c92f576e4ef064d79f892bcb6ef7b7e5c9 100644
--- a/misc-scripts/analysis_description/analysis.descriptions
+++ b/misc-scripts/analysis_description/analysis.descriptions
@@ -30,7 +30,7 @@
27 polyA_site Feature imported from <a rel="external" href="http://www.flybase.org">FlyBase</a>. PolyA Site 1
28 ARRAY_LIV_AEGDETOX_0.25k_v1 Liverpool University - detox array reporters ARRAY_LIV_AEGDETOX_0.25k_v1 1
29 regulatory_region Feature imported from <a rel="external" href="http://www.flybase.org">FlyBase</a>. Regulatory Region 1
-30 GSTEN Genes were annotated by <a rel="external" href="http://www.genoscope.cns.fr/spip/">Genoscope</a>, combining evidence from <a rel="external" href="http://www1.imim.es/software/geneid/">Geneid</a>, <a rel="external" href="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-45VGF7T-9&_user=776054&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=776054&md5=aa15a5f8122912c172ddb9dd15b237dc">Genscan</a>, <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT">GeneWise</a> and <a rel="external" href="http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html">Exofish</a> predictions with alignments of Tetraodon cDNAs to the genome. This was done automatically using <a rel="external" href="http://genome.cshlp.org/cgi/content/full/12/9/1418">GAZE</a> with a custom-designed configuration and gene structure model. Genoscope gene 1 {'label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label','MultiTop' => 'gene_label','MultiBottom' => 'transcript_label','alignsliceviewbottom' => 'transcript_label'}}
+30 GSTEN Genes were annotated by <a rel="external" href="http://www.genoscope.cns.fr/spip/">Genoscope</a>, combining evidence from <a rel="external" href="http://www1.imim.es/software/geneid/">Geneid</a>, <a rel="external" href="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-45VGF7T-9&_user=776054&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=776054&md5=aa15a5f8122912c172ddb9dd15b237dc">Genscan</a>, <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT">GeneWise</a> and <a rel="external" href="http://www.nature.com/ng/journal/v25/n2/abs/ng0600_235.html">Exofish</a> predictions with alignments of Tetraodon cDNAs to the genome. This was done automatically using <a rel="external" href="http://genome.cshlp.org/cgi/content/full/12/9/1418">GAZE</a> with a custom-designed configuration and gene structure model. Genoscope gene 1 {'label_key' => '[text_label] [display_label]','default' => {'MultiTop' => 'gene_label','contigviewbottom' => 'transcript_label','MultiBottom' => 'transcript_label','contigviewtop' => 'gene_label','alignsliceviewbottom' => 'transcript_label','cytoview' => 'gene_label'}, 'key' => 'ensembl', 'name' => 'Ensembl gene', 'multi_caption' => 'Ensembl genes, or Merged Ensembl and Havana genes'}
31 tRNAscan Prediction of tRNAs in genomic sequence is through <a rel="external" href="http://nar.oxfordjournals.org/cgi/content/full/25/5/955 ">tRNAscan-SE</a>. See <a href="/info/docs/genebuild/ncrna.html" class="cp=external">article.</a> tRNA 1
32 gene3d Gene3D analysis as of interpro_scan.pl gene3d 1 {'type'=>'alignment'}
33 ARRAY_UCR_GillMgMT_0.2K_v2 University of California, Riverside - Midgut and MT Chip reporters ARRAY_UCR_GillMgMT_0.2K_v2 1
@@ -74,7 +74,7 @@
71 human_est Homo sapiens 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Human EST 1 {'type'=>'est'}
72 cow_protein Cow protein sequences from <a rel="external" href="http://uniprot.org">UniProtKB</a> and <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT">GeneWise</a>. Cow prot. 1
73 caenorhabditis_est Caenorhabditis ESTs aligned to the genome using BLAT (excluding C.elegans) caenorhabditis EST 1 {'type'=>'est'}
-74 singapore_est Expressed Sequence Tag (EST)-based gene prediction provided by B. Kumarasamy and E. Stupka. Singapore gene 1 {'label_key' => '[text_label] [display_label]','key' => 'singapore_est'}
+74 singapore_est Expressed Sequence Tag (EST)-based gene prediction provided by B. Kumarasamy and E. Stupka. Singapore gene 1 {'label_key' => '[text_label] [display_label]','key' => 'singapore_est','dna_align_feature' => {'do_not_display' => 1}}
75 Uniprot_SW Proteins from the <a rel="external" href="http://uniprot.org">UniProtKB Swiss-Prot</a> database, aligned to the genome. UniProt prot. 1
76 drosophila_est Drosophila melanogaster 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Fly EST 1 {'type'=>'est'}
77 Uniprot_non_mammal Non-mammal proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted (non-mammalian) peptides to UniProtKB proteins. non-mammal UniProt prot. 1
@@ -109,7 +109,7 @@
106 chimp_cdna Pan troglodytes cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Chimpanzee cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'}
107 qtl Quantitative Trait Loci (QTL) features. QTL 1
108 Tmhmm Prediction of transmembrane helices in proteins by <a rel="external" href="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-457D7V9-K&_user=776054&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_version=1&_urlVersion=0&_userid=776054&md5=a113464457fa5206c6699b9d464cbfee">TMHMM</a>. Transmembrane helices 1
-109 rat_cdna Rattus norvegicus cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Rat RefSeq/EMBL cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna','dna_align_feature' => {'do_not_display' => '1'}}
+109 rat_cdna Rattus norvegicus cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Rat RefSeq/EMBL cDNA 1 {'dna_align_feature' => {'do_not_display' => '1'},'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'}
110 sequence_variant Feature imported from <a rel="external" href="http://www.flybase.org">FlyBase</a>. Sequence Variant 1
111 CCDS Protein coding sequences agreed upon by the Consensus Coding Sequence project, or <a href="/info/docs/genebuild/ccds.html" class="cp-external">CCDS</a>. CCDS set 1 {'default' => {'contigviewbottom' => 'normal'},'type' => 'cdna'}
112 platypus_olfactory_receptors Manually curated olfactory receptor sequences from <a rel="external" href="http://www.funpecrp.com.br/gmr2008b/issue.asp?volume=541&capitulo=551#anc_206">Tsviya Olender</a> P.O.R. gene 1 {'label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label','MultiTop' => 'gene_label','MultiBottom' => 'transcript_label','alignsliceviewbottom' => 'transcript_label'}}
@@ -123,7 +123,7 @@
120 ncRNA Non-coding RNA (ncRNA) is predicted using sequences from <a href="http://rfam.sanger.ac.uk">RFAM</a> and <a href="http://microrna.sanger.ac.uk/sequences/index.shtml">miRBase</a>. See <a href="/info/docs/genebuild/ncrna.html" class="cp-external">article</a>. ncRNA gene 1 {'colour_key' => 'rna_[status]','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label','MultiTop' => 'gene_label','MultiBottom' => 'transcript_label','alignsliceviewbottom' => 'transcript_label'}}
121 xlaevis_EST Xenopus laevis 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. X.laevis EST 1 {'type'=>'est'}
122 snpDensity Density of Single Nucleotide Polymorphisms (SNPs) calculated by variation_density.pl (see scripts at the <a rel="external" href="http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/?root=ensembl">Sanger Institute CVS</a> repository). SNP Density 1
-123 Medaka_TranscriptCoalescer Medaka genes, predicted using Medaka ESTs as input for the gene-predicting module TranscriptCoalescer. EST-based gene 1 {'label_key' => '[text_label] [display_label]','label' => '[text_label] [display_label]', 'multi_key' => 'estgene'}
+123 Medaka_TranscriptCoalescer Medaka genes, predicted using Medaka ESTs as input for the gene-predicting module TranscriptCoalescer. EST-based gene 1 {'label_key' => '[text_label] [display_label]','key' => 'estgene','label' => '[text_label] [display_label]','name' => 'EST-based gene'}
124 human_refseq Human proteins from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> used in the <a href="/info/docs/genebuild/index.html" class="cp-external">genebuild</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT">GeneWise</a>. Human RefSeq prot. 1
125 Vertrna Positions of vertebrate mRNAs along the genome. mRNAs are from the <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> database. Initial alignments are performed using TBLASTN of Genscan-predicted peptides against EMBL mRNAs. EMBL vertebrate cDNA 1 {'type' => 'cdna','default' => {'contigviewbottom'=>'stack'}}
126 fugu_cdna Takifugu cDNAs from <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> and <a rel="external" href="http://www.ncbi.nlm.nih.gov/Genbank/">Genbank</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Takifugu cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'}
@@ -180,7 +180,7 @@
177 WGA2Genes Alignment to a human Ensembl protein inferred by projecting through a BLASTZ DNA alignment to the human genome BLASTZ prot. 1
178 human_one2one_mus_orth Human ensembl transcripts that are <a href="/info/docs/compara/homology_method.html" class="cp-external">one-to-one orthologues</a> with mouse are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Human protein 1
#179 Mono_sup_RepeatMask Interspersed repeats and low complexity sequence identified by <a rel="external" href="http://www.repeatmasker.org/">RepeatMasker</a> using a supplemental repeat database specific to Monodelphis. Supp. Repeats (Recon) 1
-180 CDM Tetraodon cDNAs were prepared from 7 adult tissues by Genoscope, and aligned using BLAST and EST2GENOME <a rel="externa" href="http://www.ncbi.nlm.nih.gov/pubmed/9283765?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum">(R. Mott, Comput Appl Biosci. 1997 13:477-8)</a>. Tetraodon cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna','key' => 'tetraodon_cdna'}
+180 CDM Tetraodon cDNAs were prepared from 7 adult tissues by Genoscope, and aligned using BLAST and EST2GENOME <a rel="externa" href="http://www.ncbi.nlm.nih.gov/pubmed/9283765?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum">(R. Mott, Comput Appl Biosci. 1997 13:477-8)</a>. Tetraodon cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna','key' => 'tetraodon_cdna','name' => 'Tetraodon cDNA'}
181 HOX HOX genes manually curated by <a rel="external" href="http://www.genoscope.cns.fr/spip/">Genoscope</a>. HOX gene 1 {'label' => '[text_label] [display_label]'}
182 brigpepX C. briggsae proteins aligned by WU-BlastX brigpepX 1
183 tRNA transfer RNA genes tRNA 1 {'caption' => 'Non-coding','name' => 'Worm non-coding genes','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label','MultiTop' => 'gene_label','MultiBottom' => 'transcript_label','alignsliceviewbottom' => 'transcript_label'},'key' => 'ncRNA'}
@@ -202,7 +202,7 @@
200 slimswissprotX Swissprot proteins aligned by WU-BlastX slimswissprotX 1
201 aberration_junction Feature imported from <a rel="external" href="http://www.flybase.org">FlyBase</a>. Aberration junction 1
202 human_protein Human proteins from <a rel="external" href="http://uniprot.org">UniProtKB</a> used in the <a href="/info/docs/genebuild/index.html" class="cp-external">genebuild</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT">GeneWise</a>. Human UniProt prot. 1
-203 singapore_protein Protein-based gene-prediction Singapore gene 1 {'label' => '[text_label] [display_label]','key' => 'singapore_est'}
+203 singapore_protein Protein-based gene-prediction Singapore gene 1 {'label' => '[text_label] [display_label]','key' => 'singapore_est',protein_align_feature' => {'do_not_display' => 1}}
204 slimtremblP TrEMBL proteins aligned by WU-BlastP slimtremblP 1 {'type'=>'alignment'}
205 UniGene Positions of <a rel="external" href="http://ncbi.nlm.nih.gov/UniGene/">UniGene</a> sequences along the genome. These are determined using TBLASTN of Genscan predictions against UniGene sequences. Unigene EST cluster 1 {'type' =>'cdna','default'=>{'contigviewbottom' => 'stack'}}
206 jgi_v1 Alignments to Ciona intestinalis gene models predicted by <a rel="external" href="http://www.jgi.doe.gov/genome-projects/">JGI</a> on <a rel="external" href="http://www.sciencemag.org/cgi/content/full/298/5601/2157">assembly version 1.0</a>. JGI v1 prediction 1
@@ -216,12 +216,12 @@
214 orangutan_cdna Orangutan cDNAs from RefSeq and EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31) Orangutan cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'}
215 Uniprot_TR Proteins from the <a rel="external" href="http://uniprot.org">UniProtKB TrEMBL</a> database, aligned to the genome. TrEMBL prot. 1
216 EverythingBlast Proteins placed on the genome with BLASTX All BLAST 1
-217 tetraodon_cdna Tetraodon cDNAs from <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> and <a rel="external" href="http://www.ncbi.nlm.nih.gov/Genbank/">Genbank</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Tetraodon cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna','key' => 'tetraodon_cdna'}
+217 tetraodon_cdna Tetraodon cDNAs from <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> and <a rel="external" href="http://www.ncbi.nlm.nih.gov/Genbank/">Genbank</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Tetraodon cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna','key' => 'tetraodon_cdna','name' => 'Tetraodon cDNA'}
#218 Tenrec_sup_RepeatMask Interspersed repeats and low complexity sequence identified by <a rel="external" href="http://www.repeatmasker.org">RepeatMasker</a> using a supplemental repeat database specific to Echinops telfairi. Supp. Repeats (Recon) 1
219 ARRAY_EMBL_MMC1_20k_v1 Vectorbase probe alignments: EMBL_MMC1_20k_v1 OLIGO EMBL_MMC1_20k_v1 1
220 platypus_est Platypus 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Platypus EST 1 {'type'=>'est'}
221 Signalp Prediction of signal peptide cleavage sites by <a rel="external" href="http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WK7-4CKBS0M-3&_user=776054&_coverDate=07%2F16%2F2004&_alid=772330061&_rdoc=1&_fmt=high&_orig=search&_cdi=6899&_sort=d&_docanchor=&view=c&_ct=1&_acct=C000042238&_version=1&_urlVersion=0&_userid=776054&md5=9f42be939814b7711268fd414604c9dd">SignalP</a>. Cleavage site (Signalp) 1
-222 ensembl_IG_gene Immunoglobulin (Ig) and T-cell receptor (TcR) genes were imported from the <a rel="external" href="http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D593?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Lefranc&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT">IMGT</a> database using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Ig/T-cell receptor gene 1 {'colour_key' => '[biotype]','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label','MultiTop' => 'gene_label','MultiBottom' => 'transcript_label','alignsliceviewbottom' => 'transcript_label'}}
+222 ensembl_IG_gene Immunoglobulin (Ig) and T-cell receptor (TcR) genes were imported from the <a rel="external" href="http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D593?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Lefranc&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT">IMGT</a> database using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Ig/T-cell receptor gene 1 {'colour_key' => '[biotype]','caption' => 'Ensembl/Havana Ig gene','name' => 'Merged Ensembl and Havana Ig/T-cell receptor genes','label_key' => '[text_label] [display_label]','default' => {'MultiTop' => 'gene_label','contigviewbottom' => 'transcript_label','MultiBottom' => 'transcript_label','contigviewtop' => 'gene_label','alignsliceviewbottom' => 'transcript_label','cytoview' => 'gene_label'},'multi_caption' => 'Ensembl IG genes, or Merged Ensembl and Havana IG genes','key' => 'ensembl_IG_gene'}
223 horse_cdna Horse cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Horse cDNA 1 {'gene' => {'type' => 'cdna','default' => {'contigviewbottom' => 'stack'}}
224 horse_protein Horse protein sequences from <a rel="external" href="http://uniprot.org">UniProtKB</a> and <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT">GeneWise</a>. Horse prot. 1
225 Est2genome_human Alignment of human ESTs (expressed sequence tags) to the genome using the program <a rel="external" href="http://emboss.sourceforge.net/apps/cvs/emboss/apps/est2genome.html">Est2genome</a>. ESTs are from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> Human EST (EST2genome) 1 {'type'=>'est'}
@@ -257,8 +257,8 @@
255 stickleback_EST Gasterosteus aculeatus 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Stickleback EST 1 {'type'=>'est'}
256 mammal_protein Mammalian proteins from <a rel="external" href="http://uniprot.org">UniProtKB</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT">GeneWise</a>. Mammal UniProt prot. 1
257 snap Ab initio gene prediction by <a rel="external" href="http://www.biomedcentral.com/1471-2105/5/59">SNAP</a>, on genomic sequence alone. SNAP prediction 1
-258 rat_est Rattus norvegicus 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Rat EST 1 {'type'=>'est','dna_align_feature' => {'do_not_display' => '1'}}
-259 ost Caenorhabditis elegans OSTs of the Vidal Lab aligned to the genome using BLAT C.elegans OST 1 {'type' => 'cdna','default' => {'contigviewbottom' => 'stack'}}
+258 rat_est Rattus norvegicus 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Rat EST 1 {'type'=>'est','gene' => {'do_not_display' => '1'}}
+259 ost Caenorhabditis elegans OSTs of the Vidal Lab aligned to the genome using BLAT C.elegans OST 1 {'dna_align_feature' => {'do_not_display' => '1'},'type' => 'est'}
260 guineapig_protein Guineapig protein sequences from Swiss-Prot/TrEMBL and RefSeq aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95) Guineapig protein 1
261 marker Markers, or sequence tagged sites (STS), from <a rel="external" href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=unists">UniSTS</a> are aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/full/7/5/541">Electronic PCR (e-PCR)</a>. Marker 1
262 ArthropodaBlast Proteins placed on the genome with BLASTX Arthropoda BLAST 1
@@ -335,14 +335,14 @@
#334 Uniprot_mammal_pe_345 Mammalian proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted mammalian peptides to UniProtKB proteins. mammal UniProt prot. 1
335 Uniprot_primate Primate proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted primate peptides to UniProtKB proteins. primate UniProt prot. 1
#336 Uniprot_primate2 Primate proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted primate peptides to UniProtKB proteins. primate UniProt prot. 1
-337 WGA2Genes_ContigAwareNet Alignment to a human Ensembl protein inferred by projecting through a BLASTZ DNA alignment to the human genome BLASTZ prot, using ContigAwareNet. Proj. human gene 1 {'key' => 'WGA2Genes_ContigAwareNet','multi_key' => 'ensembl_projection'}
-338 WGA2Genes_HiveChain Alignment to a human Ensembl protein inferred by projecting through a BLASTZ DNA alignment to the human genome BLASTZ prot, using HiveChain. Proj. human gene 1 {'key' => 'WGA2Genes_ContigAwareNet','multi_key' => 'ensembl_projection'}
+337 WGA2Genes_ContigAwareNet Alignment to a human Ensembl protein inferred by projecting through a BLASTZ DNA alignment to the human genome BLASTZ prot, using ContigAwareNet. Proj. human gene 1 {'key' => 'WGA2Genes_ContigAwareNet','name' => 'Proj. human gene'}
+338 WGA2Genes_HiveChain Alignment to a human Ensembl protein inferred by projecting through a BLASTZ DNA alignment to the human genome BLASTZ prot, using HiveChain. Proj. human gene 1 {'key' => 'WGA2Genes_ContigAwareNet','name' => 'Proj. human gene'}
339 rat_cdna2genome Rattus norvegicus cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate cnda2geome model</a>. Rat RefSeq/EMBL cdna2genome 0
340 pig_cdna Pig cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. pig cDNA 1 {'type' => 'cdna','default' => {'contigviewbottom' => 'stack'}}
341 pig_est Pig 'Expressed Sequence Tags' (ESTs) from the <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> database are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. pig EST 1 {'type'=>'est'}
342 pig_protein Pig protein sequences from Swiss-Prot/TrEMBL and RefSeq aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95) pig protein 1
-343 ensembl_havana_IG_gene Immunoglobulin (Ig) and T-cell receptor (TcR) genes where the Ensembl models build from the set imported from the <a rel="external" href="http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D593?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Lefranc&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT">IMGT</a> database using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a> overlap one of the gene models imported from the manually annotated IG gene set from the <a rel="external" href="http://www.sanger.ac.uk/HGP/havana/havana.shtml">Havana</a> project. Ig/T-cell receptor gene 1 {'colour_key' => '[biotype]','caption' => 'Ensembl/Havana gene','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label','MultiTop' => 'gene_label','MultiBottom' => 'transcript_label','alignsliceviewbottom' => 'transcript_label'},'key' => 'ensembl','multi_caption' => 'Ensembl genes, or Merged Ensembl and Havana genes'}
-344 havana_IG_gene Immunoglobulin (Ig) and T-cell receptor (TcR) genes imported from the manually annotated IG gene set from the <a rel="external" href="http://www.sanger.ac.uk/HGP/havana/havana.shtml">Havana</a> project. Vega gene 1 {'colour_key' => '[biotype]_[status]','caption' => 'Ensembl/Havana gene','label_key' => '[text_label] [display_label]','name' => 'Merged Ensembl and Havana Genes','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label','MultiTop' => 'gene_label','MultiBottom' => 'transcript_label','alignsliceviewbottom' => 'transcript_label'},'key' => 'ensembl','multi_caption' => 'Ensembl genes, or Merged Ensembl and Havana genes'}
+343 ensembl_havana_IG_gene Immunoglobulin (Ig) and T-cell receptor (TcR) genes where the Ensembl models build from the set imported from the <a rel="external" href="http://nar.oxfordjournals.org/cgi/content/full/33/suppl_1/D593?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=Lefranc&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT">IMGT</a> database using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a> overlap one of the gene models imported from the manually annotated IG gene set from the <a rel="external" href="http://www.sanger.ac.uk/HGP/havana/havana.shtml">Havana</a> project. Ig/T-cell receptor gene 1 {'colour_key' => '[biotype]','caption' => 'Ensembl/Havana Ig gene','name' => 'Merged Ensembl and Havana Ig/T-cell receptor genes','label_key' => '[text_label] [display_label]','default' => {'MultiTop' => 'gene_label','contigviewbottom' => 'transcript_label','MultiBottom' => 'transcript_label','contigviewtop' => 'gene_label','alignsliceviewbottom' => 'transcript_label','cytoview' => 'gene_label'},'multi_caption' => 'Ensembl IG genes, or Merged Ensembl and Havana IG genes','key' => 'ensembl_IG_gene'}
+344 havana_IG_gene Immunoglobulin (Ig) and T-cell receptor (TcR) genes imported from the manually annotated IG gene set from the <a rel="external" href="http://www.sanger.ac.uk/HGP/havana/havana.shtml">Havana</a> project. Vega gene 1 {'colour_key' => '[biotype]','caption' => 'Ensembl/Havana Ig gene','name' => 'Merged Ensembl and Havana Ig/T-cell receptor genes','label_key' => '[text_label] [display_label]','default' => {'MultiTop' => 'gene_label','contigviewbottom' => 'transcript_label','MultiBottom' => 'transcript_label','contigviewtop' => 'gene_label','alignsliceviewbottom' => 'transcript_label','cytoview' => 'gene_label'},'multi_caption' => 'Ensembl IG genes, or Merged Ensembl and Havana IG genes','key' => 'ensembl_IG_gene'}
345 ncRNA_pseudogene ncRNA pseudogenes imported from the manual annotation produced by Sean Eddy group. ncRNA pseudogene 1 {'colour_key' => 'rna_[status]','label_key' => '[text_label] [display_label]','default' => {'contigviewbottom' => 'transcript_label','contigviewtop' => 'gene_label','cytoview' => 'gene_label','MultiTop' => 'gene_label','MultiBottom' => 'transcript_label','alignsliceviewbottom' => 'transcript_label'}}
346 xrefcoordinatemapping xrefcoordinatemapping xrefcoordinatemapping 1
347 ppapepX Pristionchus pacificus proteins aligned by WU-BlastX PpapepX 1
@@ -357,40 +357,40 @@
#add new entries for core databases above, the following are for functional genomics
-500 Nessie Hidden Markov Model based predictions based on tiling array data Nessie (TilingHMM) 1
-501 HitList Custom hit list HitList 1
-502 SupervisedHMM Supervised Hidden Markov Model SupervisedHMM 1
-503 PHALANX_ProbeAlign Genomic alignments for PHALANX arrays PHALANX_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-504 ILLUMINA_WG_ProbeTranscriptAlign Transcript alignments for ILLUMINA_WG arrays ILLUMINA_WG_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-505 cisRED cisRED motif search (www.cisred.org) cisRED 1 {'type' => 'regulatory_regions', 'name' => 'cisRED Motifs', 'colourset' => 'synteny', 'display' =>'off' }
-506 Parzen Solexa clusters Parzen 1
-507 RegulatoryRegion Union of focus features, features overlapping focus features, and features that are contained within those RegulatoryRegion 1 {'type' => 'fg_regulatory_features', 'name' => 'Reg. Feats', 'display' =>'off', 'depth' => 10, 'default' => {'contigviewbottom' => 'normal', 'generegview' => 'normal'} }
-508 CODELINK_ProbeAlign Genomic alignments for CODELINK arrays CODELINK_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-509 AFFY_ST_ProbeTranscriptAlign Transcript alignments for AFFY_ST arrays AFFY_ST_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-510 Wiggle Solexa clusters from wiggle data Parzen 1
-511 AGILENT_ProbeTranscriptAlign Transcript alignments for AGILENT arrays AGILENT_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-512 LiftOver Remapping to new assembly performed by LiftOver LiftOver 1
-513 NestedMICA BioTIFFIN BioTIFFIN 1 { 'type' => 'regulatory_regions', 'key' => 'feature_set', 'name' => 'REDfly/BioTIFFIN', 'colourset' => 'synteny', 'display' =>'off' }
-514 SangerPCR Ratio generated by standard Sanger PCR array processing SangerPCR 1
-515 VSN_GLOG Generalised log transformation based on VSN variance stabilised scores VSN_GLOG 1 {'type' => 'histone_modifications', 'name' => 'Histone Modifications', 'display' => 'off', 'renderers' => {'off' => 'Off', 'tiling' => 'Normal'} }
-516 Nessie_NG_STD_2 Hidden Markov Model based predictions based on tiling array data HMM predictions based on tiling array data 1 {'type' => 'ctcf', 'name' => 'CTCF', 'display' => 'off', 'renderers' => {'off' => 'Off', 'tiling' => 'Normal'} }
-517 AFFY_ST_ProbeAlign Genomic alignments for AFFY_ST arrays AFFY_ST_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-518 VendorMap Original mapping provided by Array Vendor Vendor mapping 1
-519 AFFY_UTR_ProbeTranscriptAlign Transcript alignments for AFFY_UTR arrays AFFY_UTR_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-520 AFFY_UTR_ProbeAlign Genomic alignments for AFFY_UTR arrays AFFY_UTR_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-521 RawValue Raw value Raw value 1
-522 VISTA VISTA Enhancer Assay (http://enhancer.lbl.gov/) VISTA 1
-523 REDfly CRM REDfly CRMs REDfly CRM 1 { 'type' => 'regulatory_regions', 'key' => 'feature_set', 'name' => 'REDfly/BioTIFFIN', 'colourset' => 'synteny', 'display' =>'off' }
-524 miRanda miRanda microRNA target prediction (http://microrna.sanger.ac.uk/targets) miRanda 1 {'type' => 'regulatory_regions', 'key' => 'feature_set', 'name' => 'cisRED/miRanda/VISTA', 'colourset' => 'synteny', 'display' =>'off' }
-525 REDfly TFBS REDfly TFBSs REDfly TFBSs 1 { 'type' => 'regulatory_regions', 'key' => 'feature_set', 'name' => 'REDfly/BioTIFFIN', 'colourset' => 'synteny', 'display' =>'off' }
-526 Co-occurrence Overlap Co-occurrence of overlapping feature types Co-occurrence Overlap 1
-527 PHALANX_ProbeTranscriptAlign Transcript alignments for PHALANX arrays PHALANX_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-528 AGILENT_ProbeAlign Genomic alignments for AGILENT arrays AGILENT_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-529 ILLUMINA_WG_ProbeAlign Genomic alignments for ILLUMINA_WG arrays ILLUMINA_WG_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-530 T.Biweight Weighted mean standardisation using the one step Tukey Biweight algorithm Tukey Biweight 1
-531 WindowInterval Window Interval WindowInterval 1
-532 probe2transcript Microarray probes from manufacturers are aligned to the genome by Ensembl, if the probe sequences are provided. The mapping is a two-step procedure outlined <a href="/info/docs/microarray_probe_set_mapping.html">here</a>. Probe2Transcript Annotation 0
-533 LEIDEN_ProbeTranscriptAlign Transcript alignments for LEDIEN arrays LEIDEN_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-534 LEIDEN_ProbeAlign Genomic alignments for LEIDEN arrays LEIDEN_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-535 CODELINK_ProbeTranscriptAlign Transcript alignments for CODELINK arrays CODELINK_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
-536 WormBaseExpressionXrefs Imported Wormbase microarray annotations WormBase Expression Xrefs 0
+#500 Nessie Hidden Markov Model based predictions based on tiling array data Nessie (TilingHMM) 1
+#501 HitList Custom hit list HitList 1
+#502 SupervisedHMM Supervised Hidden Markov Model SupervisedHMM 1
+#503 PHALANX_ProbeAlign Genomic alignments for PHALANX arrays PHALANX_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#504 ILLUMINA_WG_ProbeTranscriptAlign Transcript alignments for ILLUMINA_WG arrays ILLUMINA_WG_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#505 cisRED cisRED motif search (www.cisred.org) cisRED 1 {'type' => 'regulatory_regions', 'name' => 'cisRED Motifs', 'colourset' => 'synteny', 'display' =>'off' }
+#506 Parzen Solexa clusters Parzen 1
+#507 RegulatoryRegion Union of focus features, features overlapping focus features, and features that are contained within those RegulatoryRegion 1 {'type' => 'fg_regulatory_features', 'name' => 'Reg. Feats', 'display' =>'off', 'depth' => 10, 'default' => {'contigviewbottom' => 'normal', 'generegview' => 'normal'} }
+#508 CODELINK_ProbeAlign Genomic alignments for CODELINK arrays CODELINK_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#509 AFFY_ST_ProbeTranscriptAlign Transcript alignments for AFFY_ST arrays AFFY_ST_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#510 Wiggle Solexa clusters from wiggle data Parzen 1
+#511 AGILENT_ProbeTranscriptAlign Transcript alignments for AGILENT arrays AGILENT_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#512 LiftOver Remapping to new assembly performed by LiftOver LiftOver 1
+#513 NestedMICA BioTIFFIN BioTIFFIN 1 { 'type' => 'regulatory_regions', 'key' => 'feature_set', 'name' => 'REDfly/BioTIFFIN','multi_caption' => 'External data','key' => 'miRanda','colourset' => 'synteny', 'display' =>'off' }
+#514 SangerPCR Ratio generated by standard Sanger PCR array processing SangerPCR 1
+#515 VSN_GLOG Generalised log transformation based on VSN variance stabilised scores VSN_GLOG 1 {'type' => 'histone_modifications', 'name' => 'Histone Modifications', 'display' => 'off', 'renderers' => {'off' => 'Off', 'tiling' => 'Normal'} }
+#516 Nessie_NG_STD_2 Hidden Markov Model based predictions based on tiling array data HMM predictions based on tiling array data 1 {'type' => 'ctcf', 'name' => 'CTCF', 'display' => 'off', 'renderers' => {'off' => 'Off', 'tiling' => 'Normal'} }
+#517 AFFY_ST_ProbeAlign Genomic alignments for AFFY_ST arrays AFFY_ST_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#518 VendorMap Original mapping provided by Array Vendor Vendor mapping 1
+#519 AFFY_UTR_ProbeTranscriptAlign Transcript alignments for AFFY_UTR arrays AFFY_UTR_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#520 AFFY_UTR_ProbeAlign Genomic alignments for AFFY_UTR arrays AFFY_UTR_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#521 RawValue Raw value Raw value 1
+#522 VISTA VISTA Enhancer Assay (http://enhancer.lbl.gov/) VISTA 1
+#523 REDfly CRM REDfly CRMs REDfly CRM 1 { 'type' => 'regulatory_regions', 'key' => 'feature_set', 'name' => 'REDfly/BioTIFFIN', 'multi_caption' => 'External data','key' => 'miRanda','colourset' => 'synteny', 'display' =>'off' }
+#524 miRanda miRanda microRNA target prediction (http://microrna.sanger.ac.uk/targets) miRanda 1 {'type' => 'regulatory_regions', 'key' => 'feature_set', 'name' => 'cisRED/miRanda/VISTA', 'multi_caption' => 'External data','key' => 'miRanda','colourset' => 'synteny', 'display' =>'off' }
+#525 REDfly TFBS REDfly TFBSs REDfly TFBSs 1 { 'type' => 'regulatory_regions', 'key' => 'feature_set', 'name' => 'REDfly/BioTIFFIN', 'multi_caption' => 'External data','key' => 'miRanda','colourset' => 'synteny', 'display' =>'off' }
+#526 Co-occurrence Overlap Co-occurrence of overlapping feature types Co-occurrence Overlap 1
+#527 PHALANX_ProbeTranscriptAlign Transcript alignments for PHALANX arrays PHALANX_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#528 AGILENT_ProbeAlign Genomic alignments for AGILENT arrays AGILENT_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#529 ILLUMINA_WG_ProbeAlign Genomic alignments for ILLUMINA_WG arrays ILLUMINA_WG_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#530 T.Biweight Weighted mean standardisation using the one step Tukey Biweight algorithm Tukey Biweight 1
+#531 WindowInterval Window Interval WindowInterval 1
+#532 probe2transcript Microarray probes from manufacturers are aligned to the genome by Ensembl, if the probe sequences are provided. The mapping is a two-step procedure outlined <a href="/info/docs/microarray_probe_set_mapping.html">here</a>. Probe2Transcript Annotation 0
+#533 LEIDEN_ProbeTranscriptAlign Transcript alignments for LEDIEN arrays LEIDEN_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#534 LEIDEN_ProbeAlign Genomic alignments for LEIDEN arrays LEIDEN_ProbeAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#535 CODELINK_ProbeTranscriptAlign Transcript alignments for CODELINK arrays CODELINK_ProbeTranscriptAlign 1 {'type' => '_oligo', 'key' => 'array_chip', 'colourset' => 'feature', 'display' =>'off' }
+#536 WormBaseExpressionXrefs Imported Wormbase microarray annotations WormBase Expression Xrefs 0