From 1403fe3ea25aaffea7dd7d6a61578c3c33f4a7bf Mon Sep 17 00:00:00 2001 From: Felix Kokocinski <fsk@sanger.ac.uk> Date: Thu, 1 Feb 2007 13:30:57 +0000 Subject: [PATCH] added Mr. Squirrel --- .../xref_mapping/sql/populate_metadata.sql | 233 +++++++++++++++++- 1 file changed, 232 insertions(+), 1 deletion(-) diff --git a/misc-scripts/xref_mapping/sql/populate_metadata.sql b/misc-scripts/xref_mapping/sql/populate_metadata.sql index f6b14c9c88..cf022c711d 100644 --- a/misc-scripts/xref_mapping/sql/populate_metadata.sql +++ b/misc-scripts/xref_mapping/sql/populate_metadata.sql @@ -44,7 +44,8 @@ INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (8090, 8090, INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9365, 9365, 'erinaceus_europaeus', 'hedgehog'); INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (37347,37347 , 'tupaia_belangeri', 'treeshrew'); INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (59463, 59463, 'myotis_lucifugus','microbat, little brown bat'); -INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9258,9258, 'ornithorhynchus_anatinus', 'platypus,duckbilledplatypus,ornithorhynchusanatinus duckbilled_platypus'); +INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9258,9258, 'ornithorhynchus_anatinus', 'platypus,duckbilledplatypus,ornithorhynchusanatinus, duckbilled_platypus'); +INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (43179, 43179 , 'spermophilus_tridecemlineatus', 'squirrel, thirteen-lined ground squirrel'); ################################################################################ # SOURCES - types of data we can read @@ -2728,3 +2729,233 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ (6, 37347,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Oryzias_latipes/Ola.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Oryzias_latipes/Ola.data.gz', now(), now(), "UniGeneParser"); + +#### Squirrel + +## EntrezGene +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ +VALUES (1110, 43179, 'ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_info.gz', now(), now(), "EntrezGeneParser"); + +## Uniprot + +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ + (1, 43179, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz', now(), now(), "UniProtParser"); + +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ + (2, 43179, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz', now(), now(), "UniProtParser"); + +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 43179, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser"); + +## refseq +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian2.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian3.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian4.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian10.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian11.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian14.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian15.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian16.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian17.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian18.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian19.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian20.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian21.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian22.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian23.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian24.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian25.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian26.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian27.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian28.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian29.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian30.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian31.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian32.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian33.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian34.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian35.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian36.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian37.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian38.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian39.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian40.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian41.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian42.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian43.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian44.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian45.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian46.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian47.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian48.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(3, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian49.protein.gpff.gz', now(), now(), "RefSeqGPFFParser"); + +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian1.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian2.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian3.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian4.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian5.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian6.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian7.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian8.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian9.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian10.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian11.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian12.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian13.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian14.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian15.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian16.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian17.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian18.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian19.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian20.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian21.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian22.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian23.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian24.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian25.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian26.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian27.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian28.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian29.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian30.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian31.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian32.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian33.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian34.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian35.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian36.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian37.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian38.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian39.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian40.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian41.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian42.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian43.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian44.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian45.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian46.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian47.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian48.rna.fna.gz', now(), now(), "RefSeqParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(4, 43179,'ftp://ftp.ncbi.nih.gov/refseq/release/vertebrate_mammalian/vertebrate_mammalian49.rna.fna.gz', now(), now(), "RefSeqParser"); + +## GO +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(1070, 43179,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); + +## Interpro +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(1300, 43179,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz', now(), now(), "InterproParser"); + +## ncRNAs presently inhouse ( points to file with dumped xrefs from transfer_ncRNA.pl) . +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4000, 43179,'LOCAL:ncRNA/ncRNA.txt', '', now(), now(), "ncRNAParser"); + +## UniGene +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ +(6, 43179,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Oryzias_latipes/Ola.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Oryzias_latipes/Ola.data.gz', now(), now(), "UniGeneParser"); -- GitLab