From 1507aefa0abdce1c94e9d95aac7ab0fe37d26d17 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Tue, 29 Jul 2008 15:24:59 +0000
Subject: [PATCH] Use the coord_system table from the database connected as the
'dnadb' database in new().
---
modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm b/modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm
index d7d2fad9dd..86f74c5bb5 100644
--- a/modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm
@@ -25,10 +25,12 @@ sub new {
#
my $sth = $self->prepare(
+ sprintf(
'SELECT mc.table_name, mc.coord_system_id, mc.max_length '
- . 'FROM meta_coord mc, coord_system cs '
+ . 'FROM meta_coord mc, %s.coord_system cs '
. 'WHERE mc.coord_system_id = cs.coord_system_id '
- . 'AND cs.species_id = ?' );
+ . 'AND cs.species_id = ?',
+ $self->db()->dnadb()->dbc()->dbname() ) );
$sth->bind_param( 1, $self->species_id(), SQL_INTEGER );
$sth->execute();
--
GitLab