From 169920f38a01e36d59485bdac16154e5f4f0fb57 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?= <ak4@sanger.ac.uk> Date: Wed, 5 Jan 2011 15:10:11 +0000 Subject: [PATCH] Update copyright year for 2011. --- modules/Bio/EnsEMBL/AlignStrainSlice.pm | 2 +- modules/Bio/EnsEMBL/Analysis.pm | 2 +- modules/Bio/EnsEMBL/Analysis/PairAlign.pm | 2 +- modules/Bio/EnsEMBL/Analysis/Programs.pm | 2 +- modules/Bio/EnsEMBL/ApiVersion.pm | 2 +- modules/Bio/EnsEMBL/ArchiveStableId.pm | 2 +- modules/Bio/EnsEMBL/AssemblyExceptionFeature.pm | 2 +- modules/Bio/EnsEMBL/AssemblyMapper.pm | 2 +- modules/Bio/EnsEMBL/Attribute.pm | 2 +- modules/Bio/EnsEMBL/BaseAlignFeature.pm | 2 +- modules/Bio/EnsEMBL/ChainedAssemblyMapper.pm | 2 +- modules/Bio/EnsEMBL/CircularSlice.pm | 2 +- modules/Bio/EnsEMBL/CoordSystem.pm | 2 +- modules/Bio/EnsEMBL/DB/ExternalFeatureFactoryI.pm | 2 +- modules/Bio/EnsEMBL/DBEntry.pm | 2 +- modules/Bio/EnsEMBL/DBLoader.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/ArchiveStableIdAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/AssemblyExceptionFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/AssemblySliceAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/AttributeAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/BaseAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/BaseAlignFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/BaseMetaContainer.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/CompressedSequenceAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/DBConnection.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/DensityFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/DensityTypeAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/GOTermAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/MergedAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/MetaContainer.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/MiscFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/MiscSetAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/PredictionExonAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/PredictionTranscriptAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/RepeatConsensusAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SeqRegionSynonymAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SimpleFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SplicingEventAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SplicingEventFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SplicingTranscriptPairAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/StatementHandle.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/SupportingFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/TranscriptSupportingFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/TranslationAdaptor.pm | 2 +- .../EnsEMBL/DBSQL/UnconventionalTranscriptAssociationAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DBSQL/UnmappedObjectAdaptor.pm | 2 +- modules/Bio/EnsEMBL/DensityFeature.pm | 2 +- modules/Bio/EnsEMBL/DensityFeatureSet.pm | 2 +- modules/Bio/EnsEMBL/DensityPlot/BinValue.pm | 2 +- modules/Bio/EnsEMBL/DensityPlot/BinValueSet.pm | 2 +- modules/Bio/EnsEMBL/DensityType.pm | 2 +- modules/Bio/EnsEMBL/DnaDnaAlignFeature.pm | 2 +- modules/Bio/EnsEMBL/DnaPepAlignFeature.pm | 2 +- modules/Bio/EnsEMBL/Exon.pm | 2 +- modules/Bio/EnsEMBL/External/BlastAdaptor.pm | 2 +- modules/Bio/EnsEMBL/External/ExternalFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Feature.pm | 2 +- modules/Bio/EnsEMBL/FeaturePair.pm | 2 +- modules/Bio/EnsEMBL/Gene.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/Archiver.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/BaseObject.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/Cache.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/Entry.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/GeneScoreBuilder.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/InternalIdMapper.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/BaseMapper.pm | 2 +- .../EnsEMBL/IdMapping/InternalIdMapper/EnsemblExonGeneric.pm | 2 +- .../EnsEMBL/IdMapping/InternalIdMapper/EnsemblGeneGeneric.pm | 2 +- .../IdMapping/InternalIdMapper/EnsemblTranscriptGeneric.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/MappingList.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/ResultAnalyser.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/ScoreBuilder.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/ScoredMappingMatrix.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/Serialisable.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AedesAegypti.pm | 2 +- .../Bio/EnsEMBL/IdMapping/StableIdGenerator/AnophelesGambiae.pm | 2 +- .../Bio/EnsEMBL/IdMapping/StableIdGenerator/EnsemblGeneric.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/StableIdMapper.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/SyntenyFramework.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/SyntenyRegion.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/TinyExon.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/TinyFeature.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/TinyGene.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/TinyTranscript.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/TinyTranslation.pm | 2 +- modules/Bio/EnsEMBL/IdMapping/TranscriptScoreBuilder.pm | 2 +- modules/Bio/EnsEMBL/IdentityXref.pm | 2 +- modules/Bio/EnsEMBL/IndividualSlice.pm | 2 +- modules/Bio/EnsEMBL/IndividualSliceFactory.pm | 2 +- modules/Bio/EnsEMBL/Intron.pm | 2 +- modules/Bio/EnsEMBL/KaryotypeBand.pm | 2 +- modules/Bio/EnsEMBL/LRGSlice.pm | 2 +- modules/Bio/EnsEMBL/Lite/DBAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Map/DBSQL/DitagAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Map/DBSQL/DitagFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Map/DBSQL/MarkerAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Map/DBSQL/MarkerFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Map/DBSQL/QtlAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Map/DBSQL/QtlFeatureAdaptor.pm | 2 +- modules/Bio/EnsEMBL/Map/Ditag.pm | 2 +- modules/Bio/EnsEMBL/Map/DitagFeature.pm | 2 +- modules/Bio/EnsEMBL/Map/MapLocation.pm | 2 +- modules/Bio/EnsEMBL/Map/Marker.pm | 2 +- modules/Bio/EnsEMBL/Map/MarkerFeature.pm | 2 +- modules/Bio/EnsEMBL/Map/MarkerSynonym.pm | 2 +- modules/Bio/EnsEMBL/Map/Qtl.pm | 2 +- modules/Bio/EnsEMBL/Map/QtlFeature.pm | 2 +- modules/Bio/EnsEMBL/MappedSlice.pm | 2 +- modules/Bio/EnsEMBL/MappedSliceContainer.pm | 2 +- modules/Bio/EnsEMBL/Mapper.pm | 2 +- modules/Bio/EnsEMBL/Mapper/Coordinate.pm | 2 +- modules/Bio/EnsEMBL/Mapper/Gap.pm | 2 +- modules/Bio/EnsEMBL/Mapper/IndelCoordinate.pm | 2 +- modules/Bio/EnsEMBL/Mapper/IndelPair.pm | 2 +- modules/Bio/EnsEMBL/Mapper/Pair.pm | 2 +- modules/Bio/EnsEMBL/Mapper/RangeRegistry.pm | 2 +- modules/Bio/EnsEMBL/Mapper/Unit.pm | 2 +- modules/Bio/EnsEMBL/MiscFeature.pm | 2 +- modules/Bio/EnsEMBL/MiscSet.pm | 2 +- modules/Bio/EnsEMBL/OntologyTerm.pm | 2 +- modules/Bio/EnsEMBL/OntologyXref.pm | 2 +- modules/Bio/EnsEMBL/PepDnaAlignFeature.pm | 2 +- modules/Bio/EnsEMBL/PredictionExon.pm | 2 +- modules/Bio/EnsEMBL/PredictionTranscript.pm | 2 +- modules/Bio/EnsEMBL/ProjectionSegment.pm | 2 +- modules/Bio/EnsEMBL/ProteinFeature.pm | 2 +- modules/Bio/EnsEMBL/Registry.pm | 2 +- modules/Bio/EnsEMBL/RepeatConsensus.pm | 2 +- modules/Bio/EnsEMBL/RepeatFeature.pm | 2 +- modules/Bio/EnsEMBL/RepeatMaskedSlice.pm | 2 +- modules/Bio/EnsEMBL/Root.pm | 2 +- modules/Bio/EnsEMBL/SNP.pm | 2 +- modules/Bio/EnsEMBL/SeqEdit.pm | 2 +- modules/Bio/EnsEMBL/SeqFeature.pm | 2 +- modules/Bio/EnsEMBL/SeqFeatureI.pm | 2 +- modules/Bio/EnsEMBL/SeqRegionSynonym.pm | 2 +- modules/Bio/EnsEMBL/SimpleFeature.pm | 2 +- modules/Bio/EnsEMBL/Slice.pm | 2 +- modules/Bio/EnsEMBL/SplicingEvent.pm | 2 +- modules/Bio/EnsEMBL/SplicingEventFeature.pm | 2 +- modules/Bio/EnsEMBL/SplicingTranscriptPair.pm | 2 +- modules/Bio/EnsEMBL/StableIdEvent.pm | 2 +- modules/Bio/EnsEMBL/StableIdHistoryTree.pm | 2 +- modules/Bio/EnsEMBL/Storable.pm | 2 +- modules/Bio/EnsEMBL/StrainSlice.pm | 2 +- modules/Bio/EnsEMBL/TopLevelAssemblyMapper.pm | 2 +- modules/Bio/EnsEMBL/Transcript.pm | 2 +- modules/Bio/EnsEMBL/TranscriptFactory.pm | 2 +- modules/Bio/EnsEMBL/TranscriptMapper.pm | 2 +- modules/Bio/EnsEMBL/Translation.pm | 2 +- modules/Bio/EnsEMBL/UnconventionalTranscriptAssociation.pm | 2 +- modules/Bio/EnsEMBL/UnmappedObject.pm | 2 +- modules/Bio/EnsEMBL/Upstream.pm | 2 +- modules/Bio/EnsEMBL/Utils/Argument.pm | 2 +- modules/Bio/EnsEMBL/Utils/AssemblyProjector.pm | 2 +- modules/Bio/EnsEMBL/Utils/BitString.pm | 2 +- modules/Bio/EnsEMBL/Utils/CigarString.pm | 2 +- modules/Bio/EnsEMBL/Utils/Collector.pm | 2 +- modules/Bio/EnsEMBL/Utils/ConfParser.pm | 2 +- modules/Bio/EnsEMBL/Utils/ConfigRegistry.pm | 2 +- modules/Bio/EnsEMBL/Utils/ConversionSupport.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_analysis.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_featurePair.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_gene.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hit.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hsp.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionExon.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_seqFeature.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/bio_ens_transcript.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/ens_bio.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/ens_bio_featurePair.pm | 2 +- modules/Bio/EnsEMBL/Utils/Converter/ens_bio_seqFeature.pm | 2 +- modules/Bio/EnsEMBL/Utils/EasyArgv.pm | 2 +- modules/Bio/EnsEMBL/Utils/Eprof.pm | 2 +- modules/Bio/EnsEMBL/Utils/EprofStack.pm | 2 +- modules/Bio/EnsEMBL/Utils/Exception.pm | 2 +- modules/Bio/EnsEMBL/Utils/Logger.pm | 2 +- modules/Bio/EnsEMBL/Utils/PolyA.pm | 2 +- modules/Bio/EnsEMBL/Utils/Scalar.pm | 2 +- modules/Bio/EnsEMBL/Utils/SchemaConversion.pm | 2 +- modules/Bio/EnsEMBL/Utils/ScriptUtils.pm | 2 +- modules/Bio/EnsEMBL/Utils/SeqDumper.pm | 2 +- modules/Bio/EnsEMBL/Utils/SeqRegionCache.pm | 2 +- modules/Bio/EnsEMBL/Utils/Sequence.pm | 2 +- modules/Bio/EnsEMBL/Utils/Slice.pm | 2 +- modules/Bio/EnsEMBL/Utils/SqlHelper.pm | 2 +- modules/Bio/EnsEMBL/Utils/TranscriptAlleles.pm | 2 +- modules/Bio/EnsEMBL/Utils/TranscriptSNPs.pm | 2 +- modules/Bio/EnsEMBL/Utils/User_defined_load.pm | 2 +- modules/Bio/EnsEMBL/Utils/VegaCuration/Gene.pm | 2 +- modules/Bio/EnsEMBL/Utils/VegaCuration/Transcript.pm | 2 +- modules/Bio/EnsEMBL/Utils/VegaCuration/Translation.pm | 2 +- 219 files changed, 219 insertions(+), 219 deletions(-) diff --git a/modules/Bio/EnsEMBL/AlignStrainSlice.pm b/modules/Bio/EnsEMBL/AlignStrainSlice.pm index 7e43982bd9..150ae12fac 100644 --- a/modules/Bio/EnsEMBL/AlignStrainSlice.pm +++ b/modules/Bio/EnsEMBL/AlignStrainSlice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Analysis.pm b/modules/Bio/EnsEMBL/Analysis.pm index 78f556658f..8760a5da00 100755 --- a/modules/Bio/EnsEMBL/Analysis.pm +++ b/modules/Bio/EnsEMBL/Analysis.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Analysis/PairAlign.pm b/modules/Bio/EnsEMBL/Analysis/PairAlign.pm index 36c627e01e..3dc696ad08 100755 --- a/modules/Bio/EnsEMBL/Analysis/PairAlign.pm +++ b/modules/Bio/EnsEMBL/Analysis/PairAlign.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Analysis/Programs.pm b/modules/Bio/EnsEMBL/Analysis/Programs.pm index 103499f944..439b9075df 100755 --- a/modules/Bio/EnsEMBL/Analysis/Programs.pm +++ b/modules/Bio/EnsEMBL/Analysis/Programs.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/ApiVersion.pm b/modules/Bio/EnsEMBL/ApiVersion.pm index e5e812a01a..9f8e5592b9 100644 --- a/modules/Bio/EnsEMBL/ApiVersion.pm +++ b/modules/Bio/EnsEMBL/ApiVersion.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/ArchiveStableId.pm b/modules/Bio/EnsEMBL/ArchiveStableId.pm index f0e0bb1eb4..a97a77e43b 100644 --- a/modules/Bio/EnsEMBL/ArchiveStableId.pm +++ b/modules/Bio/EnsEMBL/ArchiveStableId.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/AssemblyExceptionFeature.pm b/modules/Bio/EnsEMBL/AssemblyExceptionFeature.pm index f727cb8b81..76e4dfd470 100644 --- a/modules/Bio/EnsEMBL/AssemblyExceptionFeature.pm +++ b/modules/Bio/EnsEMBL/AssemblyExceptionFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/AssemblyMapper.pm b/modules/Bio/EnsEMBL/AssemblyMapper.pm index d9bcacfb20..5bc2077404 100644 --- a/modules/Bio/EnsEMBL/AssemblyMapper.pm +++ b/modules/Bio/EnsEMBL/AssemblyMapper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Attribute.pm b/modules/Bio/EnsEMBL/Attribute.pm index 937da10b6f..ea25276dce 100644 --- a/modules/Bio/EnsEMBL/Attribute.pm +++ b/modules/Bio/EnsEMBL/Attribute.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/BaseAlignFeature.pm b/modules/Bio/EnsEMBL/BaseAlignFeature.pm index 3776ba5719..9bbff33349 100644 --- a/modules/Bio/EnsEMBL/BaseAlignFeature.pm +++ b/modules/Bio/EnsEMBL/BaseAlignFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/ChainedAssemblyMapper.pm b/modules/Bio/EnsEMBL/ChainedAssemblyMapper.pm index 11517d2675..fcbba4ae14 100644 --- a/modules/Bio/EnsEMBL/ChainedAssemblyMapper.pm +++ b/modules/Bio/EnsEMBL/ChainedAssemblyMapper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/CircularSlice.pm b/modules/Bio/EnsEMBL/CircularSlice.pm index f416749961..eb2624eec0 100644 --- a/modules/Bio/EnsEMBL/CircularSlice.pm +++ b/modules/Bio/EnsEMBL/CircularSlice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/CoordSystem.pm b/modules/Bio/EnsEMBL/CoordSystem.pm index 939344449b..6d10fd0607 100644 --- a/modules/Bio/EnsEMBL/CoordSystem.pm +++ b/modules/Bio/EnsEMBL/CoordSystem.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DB/ExternalFeatureFactoryI.pm b/modules/Bio/EnsEMBL/DB/ExternalFeatureFactoryI.pm index d7d8030acd..e13d5f6ac4 100755 --- a/modules/Bio/EnsEMBL/DB/ExternalFeatureFactoryI.pm +++ b/modules/Bio/EnsEMBL/DB/ExternalFeatureFactoryI.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBEntry.pm b/modules/Bio/EnsEMBL/DBEntry.pm index 6d2e7cc14b..62af6ad750 100644 --- a/modules/Bio/EnsEMBL/DBEntry.pm +++ b/modules/Bio/EnsEMBL/DBEntry.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBLoader.pm b/modules/Bio/EnsEMBL/DBLoader.pm index 22097f242c..5e7809d923 100755 --- a/modules/Bio/EnsEMBL/DBLoader.pm +++ b/modules/Bio/EnsEMBL/DBLoader.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm index bc9b2ac5e0..afcf11200a 100755 --- a/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/AnalysisAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/ArchiveStableIdAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/ArchiveStableIdAdaptor.pm index e904dcac75..cb87a0c62b 100644 --- a/modules/Bio/EnsEMBL/DBSQL/ArchiveStableIdAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/ArchiveStableIdAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/AssemblyExceptionFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/AssemblyExceptionFeatureAdaptor.pm index eef476b269..e9fe533144 100644 --- a/modules/Bio/EnsEMBL/DBSQL/AssemblyExceptionFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/AssemblyExceptionFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm index f229ca1117..5b365d45fc 100644 --- a/modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/AssemblyMapperAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/AssemblySliceAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/AssemblySliceAdaptor.pm index 8da6d61fd5..daf6209916 100644 --- a/modules/Bio/EnsEMBL/DBSQL/AssemblySliceAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/AssemblySliceAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/AttributeAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/AttributeAdaptor.pm index f82ad12249..b08db99fb3 100644 --- a/modules/Bio/EnsEMBL/DBSQL/AttributeAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/AttributeAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/BaseAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/BaseAdaptor.pm index a94476d93b..6baac4b2de 100755 --- a/modules/Bio/EnsEMBL/DBSQL/BaseAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/BaseAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/BaseAlignFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/BaseAlignFeatureAdaptor.pm index b1708fe363..589ce955f7 100644 --- a/modules/Bio/EnsEMBL/DBSQL/BaseAlignFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/BaseAlignFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm index 1c9c689b03..aef74058f8 100644 --- a/modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/BaseFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/BaseMetaContainer.pm b/modules/Bio/EnsEMBL/DBSQL/BaseMetaContainer.pm index 4c88461c03..18a1aa89e2 100644 --- a/modules/Bio/EnsEMBL/DBSQL/BaseMetaContainer.pm +++ b/modules/Bio/EnsEMBL/DBSQL/BaseMetaContainer.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/CompressedSequenceAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/CompressedSequenceAdaptor.pm index b8b9c1c1c8..e29903fc7d 100644 --- a/modules/Bio/EnsEMBL/DBSQL/CompressedSequenceAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/CompressedSequenceAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm index 596dee396a..7ad08ba658 100644 --- a/modules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/CoordSystemAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm index 9a816cabc6..93a76fc253 100755 --- a/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/DBAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/DBConnection.pm b/modules/Bio/EnsEMBL/DBSQL/DBConnection.pm index 9d3ded2a37..869f02cde9 100644 --- a/modules/Bio/EnsEMBL/DBSQL/DBConnection.pm +++ b/modules/Bio/EnsEMBL/DBSQL/DBConnection.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm index c10709157c..94561913f5 100644 --- a/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/DensityFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DensityFeatureAdaptor.pm index e5b1b1109c..bb9fb65797 100644 --- a/modules/Bio/EnsEMBL/DBSQL/DensityFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/DensityFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/DensityTypeAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DensityTypeAdaptor.pm index 621d3d2293..633dd9d1e7 100644 --- a/modules/Bio/EnsEMBL/DBSQL/DensityTypeAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/DensityTypeAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm index 065053cb38..02fd950703 100644 --- a/modules/Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/DnaAlignFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm index c4ab8fbb38..0572f94364 100644 --- a/modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/ExonAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/GOTermAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/GOTermAdaptor.pm index 9bf5a1aa0d..f757ddc72a 100644 --- a/modules/Bio/EnsEMBL/DBSQL/GOTermAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/GOTermAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm index b17bfdf1e9..44e5b7be84 100644 --- a/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm index 0d97ce0546..b8632688ed 100644 --- a/modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/KaryotypeBandAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/MergedAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/MergedAdaptor.pm index b94f41c5a5..bc1b568d98 100644 --- a/modules/Bio/EnsEMBL/DBSQL/MergedAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/MergedAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/MetaContainer.pm b/modules/Bio/EnsEMBL/DBSQL/MetaContainer.pm index 2ea98350dc..594b8f245d 100644 --- a/modules/Bio/EnsEMBL/DBSQL/MetaContainer.pm +++ b/modules/Bio/EnsEMBL/DBSQL/MetaContainer.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm b/modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm index 8b9b4b8f59..d5333a4098 100644 --- a/modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm +++ b/modules/Bio/EnsEMBL/DBSQL/MetaCoordContainer.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/MiscFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/MiscFeatureAdaptor.pm index 337d6a7239..35d3c721b2 100644 --- a/modules/Bio/EnsEMBL/DBSQL/MiscFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/MiscFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/MiscSetAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/MiscSetAdaptor.pm index 09ce64a87f..04e8f0de7d 100644 --- a/modules/Bio/EnsEMBL/DBSQL/MiscSetAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/MiscSetAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm index 7fe6279e90..c726a5c6c5 100644 --- a/modules/Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm index 87189b2768..c31029d7f7 100644 --- a/modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/OntologyTermAdaptor.pm @@ -1,7 +1,7 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/PredictionExonAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/PredictionExonAdaptor.pm index 3e307760a2..c8109a8482 100644 --- a/modules/Bio/EnsEMBL/DBSQL/PredictionExonAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/PredictionExonAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/PredictionTranscriptAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/PredictionTranscriptAdaptor.pm index 59cd535dcb..0aeb9f5838 100644 --- a/modules/Bio/EnsEMBL/DBSQL/PredictionTranscriptAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/PredictionTranscriptAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm index b00b7c6290..e734d2eac7 100644 --- a/modules/Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/ProteinAlignFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm index b9f8dd89fe..073dad63b2 100755 --- a/modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/ProteinFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm index ad7837c171..36abf12ef0 100644 --- a/modules/Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/ProxySNPAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/RepeatConsensusAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/RepeatConsensusAdaptor.pm index 734b0c983d..bd5b7aed4c 100644 --- a/modules/Bio/EnsEMBL/DBSQL/RepeatConsensusAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/RepeatConsensusAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm index 6ed5ee4596..3dd5c9fc9f 100644 --- a/modules/Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm index eea4f04de7..0e6cb55eea 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SOTermAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SeqRegionSynonymAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SeqRegionSynonymAdaptor.pm index ff0d629440..5e2bde4468 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SeqRegionSynonymAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SeqRegionSynonymAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm index 9dda5b63ec..d5bbfa4437 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SequenceAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SimpleFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SimpleFeatureAdaptor.pm index 60d7c11f53..1d9bd8a80f 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SimpleFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SimpleFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm index f57ace169e..13fd3e7095 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SplicingEventAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SplicingEventAdaptor.pm index 9cb54624b1..906751b9b1 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SplicingEventAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SplicingEventAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SplicingEventFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SplicingEventFeatureAdaptor.pm index 996fbb15d2..9c97276bcd 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SplicingEventFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SplicingEventFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SplicingTranscriptPairAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SplicingTranscriptPairAdaptor.pm index 166e57b9f4..6e6b68b249 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SplicingTranscriptPairAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SplicingTranscriptPairAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/StatementHandle.pm b/modules/Bio/EnsEMBL/DBSQL/StatementHandle.pm index 4476a4726a..4c426b5fb8 100644 --- a/modules/Bio/EnsEMBL/DBSQL/StatementHandle.pm +++ b/modules/Bio/EnsEMBL/DBSQL/StatementHandle.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/SupportingFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/SupportingFeatureAdaptor.pm index a446101ee7..85a4a42869 100644 --- a/modules/Bio/EnsEMBL/DBSQL/SupportingFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/SupportingFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm index 152ee73fb1..f90146ecdf 100644 --- a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/TranscriptSupportingFeatureAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/TranscriptSupportingFeatureAdaptor.pm index 0556b8b532..f0f190e351 100644 --- a/modules/Bio/EnsEMBL/DBSQL/TranscriptSupportingFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/TranscriptSupportingFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/TranslationAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/TranslationAdaptor.pm index c8a00aef91..9d2540773e 100644 --- a/modules/Bio/EnsEMBL/DBSQL/TranslationAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/TranslationAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/UnconventionalTranscriptAssociationAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/UnconventionalTranscriptAssociationAdaptor.pm index 7a038d31b9..689dab1c1d 100644 --- a/modules/Bio/EnsEMBL/DBSQL/UnconventionalTranscriptAssociationAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/UnconventionalTranscriptAssociationAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DBSQL/UnmappedObjectAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/UnmappedObjectAdaptor.pm index 57cc68ae86..6ebdfb67ad 100644 --- a/modules/Bio/EnsEMBL/DBSQL/UnmappedObjectAdaptor.pm +++ b/modules/Bio/EnsEMBL/DBSQL/UnmappedObjectAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DensityFeature.pm b/modules/Bio/EnsEMBL/DensityFeature.pm index f3401239bd..f6461180ed 100644 --- a/modules/Bio/EnsEMBL/DensityFeature.pm +++ b/modules/Bio/EnsEMBL/DensityFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DensityFeatureSet.pm b/modules/Bio/EnsEMBL/DensityFeatureSet.pm index 738646ff48..676fb439f2 100644 --- a/modules/Bio/EnsEMBL/DensityFeatureSet.pm +++ b/modules/Bio/EnsEMBL/DensityFeatureSet.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DensityPlot/BinValue.pm b/modules/Bio/EnsEMBL/DensityPlot/BinValue.pm index 8ecec5f64f..378ddff58e 100644 --- a/modules/Bio/EnsEMBL/DensityPlot/BinValue.pm +++ b/modules/Bio/EnsEMBL/DensityPlot/BinValue.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DensityPlot/BinValueSet.pm b/modules/Bio/EnsEMBL/DensityPlot/BinValueSet.pm index 4a59f9de98..41ecafdc5f 100644 --- a/modules/Bio/EnsEMBL/DensityPlot/BinValueSet.pm +++ b/modules/Bio/EnsEMBL/DensityPlot/BinValueSet.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DensityType.pm b/modules/Bio/EnsEMBL/DensityType.pm index ab0b8b39f7..6232f9cedb 100644 --- a/modules/Bio/EnsEMBL/DensityType.pm +++ b/modules/Bio/EnsEMBL/DensityType.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DnaDnaAlignFeature.pm b/modules/Bio/EnsEMBL/DnaDnaAlignFeature.pm index b35928b26f..67b7d7cd36 100644 --- a/modules/Bio/EnsEMBL/DnaDnaAlignFeature.pm +++ b/modules/Bio/EnsEMBL/DnaDnaAlignFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/DnaPepAlignFeature.pm b/modules/Bio/EnsEMBL/DnaPepAlignFeature.pm index 63d1fae043..cfce608ff3 100644 --- a/modules/Bio/EnsEMBL/DnaPepAlignFeature.pm +++ b/modules/Bio/EnsEMBL/DnaPepAlignFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Exon.pm b/modules/Bio/EnsEMBL/Exon.pm index c028ef1d7e..ea5abbdcd7 100755 --- a/modules/Bio/EnsEMBL/Exon.pm +++ b/modules/Bio/EnsEMBL/Exon.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/External/BlastAdaptor.pm b/modules/Bio/EnsEMBL/External/BlastAdaptor.pm index 011f99af54..e6e413fa21 100644 --- a/modules/Bio/EnsEMBL/External/BlastAdaptor.pm +++ b/modules/Bio/EnsEMBL/External/BlastAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/External/ExternalFeatureAdaptor.pm b/modules/Bio/EnsEMBL/External/ExternalFeatureAdaptor.pm index c224f34c00..7fdcbfe5b3 100644 --- a/modules/Bio/EnsEMBL/External/ExternalFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/External/ExternalFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Feature.pm b/modules/Bio/EnsEMBL/Feature.pm index b355c36b5f..e40ec93d7b 100644 --- a/modules/Bio/EnsEMBL/Feature.pm +++ b/modules/Bio/EnsEMBL/Feature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/FeaturePair.pm b/modules/Bio/EnsEMBL/FeaturePair.pm index 483ba0961d..ef4fbcfe39 100755 --- a/modules/Bio/EnsEMBL/FeaturePair.pm +++ b/modules/Bio/EnsEMBL/FeaturePair.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Gene.pm b/modules/Bio/EnsEMBL/Gene.pm index a1a151c931..6d4999b378 100755 --- a/modules/Bio/EnsEMBL/Gene.pm +++ b/modules/Bio/EnsEMBL/Gene.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/Archiver.pm b/modules/Bio/EnsEMBL/IdMapping/Archiver.pm index 3ee77a8c07..c5827afeb5 100644 --- a/modules/Bio/EnsEMBL/IdMapping/Archiver.pm +++ b/modules/Bio/EnsEMBL/IdMapping/Archiver.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/BaseObject.pm b/modules/Bio/EnsEMBL/IdMapping/BaseObject.pm index ec3273784a..3177940292 100644 --- a/modules/Bio/EnsEMBL/IdMapping/BaseObject.pm +++ b/modules/Bio/EnsEMBL/IdMapping/BaseObject.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/Cache.pm b/modules/Bio/EnsEMBL/IdMapping/Cache.pm index 78f22f94ba..d52ff04bdf 100644 --- a/modules/Bio/EnsEMBL/IdMapping/Cache.pm +++ b/modules/Bio/EnsEMBL/IdMapping/Cache.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/Entry.pm b/modules/Bio/EnsEMBL/IdMapping/Entry.pm index 368824824b..000addfc78 100644 --- a/modules/Bio/EnsEMBL/IdMapping/Entry.pm +++ b/modules/Bio/EnsEMBL/IdMapping/Entry.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm b/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm index 7118665e73..91501df89f 100644 --- a/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm +++ b/modules/Bio/EnsEMBL/IdMapping/ExonScoreBuilder.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/GeneScoreBuilder.pm b/modules/Bio/EnsEMBL/IdMapping/GeneScoreBuilder.pm index a49bcccf22..28cefdc135 100644 --- a/modules/Bio/EnsEMBL/IdMapping/GeneScoreBuilder.pm +++ b/modules/Bio/EnsEMBL/IdMapping/GeneScoreBuilder.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper.pm b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper.pm index 0f86c984f2..8516bccd94 100644 --- a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper.pm +++ b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/BaseMapper.pm b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/BaseMapper.pm index 88f82b2f27..05920e1a44 100644 --- a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/BaseMapper.pm +++ b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/BaseMapper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblExonGeneric.pm b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblExonGeneric.pm index 8a33c9aaa8..81729deb0d 100644 --- a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblExonGeneric.pm +++ b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblExonGeneric.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblGeneGeneric.pm b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblGeneGeneric.pm index e1b7f7e15c..518d6851f6 100644 --- a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblGeneGeneric.pm +++ b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblGeneGeneric.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblTranscriptGeneric.pm b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblTranscriptGeneric.pm index fdb29651b6..32bbc14f5a 100644 --- a/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblTranscriptGeneric.pm +++ b/modules/Bio/EnsEMBL/IdMapping/InternalIdMapper/EnsemblTranscriptGeneric.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/MappingList.pm b/modules/Bio/EnsEMBL/IdMapping/MappingList.pm index 7ea89c182f..87f94eed19 100644 --- a/modules/Bio/EnsEMBL/IdMapping/MappingList.pm +++ b/modules/Bio/EnsEMBL/IdMapping/MappingList.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/ResultAnalyser.pm b/modules/Bio/EnsEMBL/IdMapping/ResultAnalyser.pm index e1c8b374d2..7c55745d00 100644 --- a/modules/Bio/EnsEMBL/IdMapping/ResultAnalyser.pm +++ b/modules/Bio/EnsEMBL/IdMapping/ResultAnalyser.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/ScoreBuilder.pm b/modules/Bio/EnsEMBL/IdMapping/ScoreBuilder.pm index b0c6bb544f..b41349c21b 100644 --- a/modules/Bio/EnsEMBL/IdMapping/ScoreBuilder.pm +++ b/modules/Bio/EnsEMBL/IdMapping/ScoreBuilder.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/ScoredMappingMatrix.pm b/modules/Bio/EnsEMBL/IdMapping/ScoredMappingMatrix.pm index a76ac8a6dd..d9eae73919 100644 --- a/modules/Bio/EnsEMBL/IdMapping/ScoredMappingMatrix.pm +++ b/modules/Bio/EnsEMBL/IdMapping/ScoredMappingMatrix.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/Serialisable.pm b/modules/Bio/EnsEMBL/IdMapping/Serialisable.pm index 78df872e01..0793eb284e 100644 --- a/modules/Bio/EnsEMBL/IdMapping/Serialisable.pm +++ b/modules/Bio/EnsEMBL/IdMapping/Serialisable.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AedesAegypti.pm b/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AedesAegypti.pm index f374f7c5c7..13949ba495 100644 --- a/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AedesAegypti.pm +++ b/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AedesAegypti.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AnophelesGambiae.pm b/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AnophelesGambiae.pm index 5d0b460e3b..ca98cbe35f 100644 --- a/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AnophelesGambiae.pm +++ b/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/AnophelesGambiae.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/EnsemblGeneric.pm b/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/EnsemblGeneric.pm index 1712b3d947..c0363c862a 100644 --- a/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/EnsemblGeneric.pm +++ b/modules/Bio/EnsEMBL/IdMapping/StableIdGenerator/EnsemblGeneric.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/StableIdMapper.pm b/modules/Bio/EnsEMBL/IdMapping/StableIdMapper.pm index 40c02fd671..417be5f5b4 100644 --- a/modules/Bio/EnsEMBL/IdMapping/StableIdMapper.pm +++ b/modules/Bio/EnsEMBL/IdMapping/StableIdMapper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/SyntenyFramework.pm b/modules/Bio/EnsEMBL/IdMapping/SyntenyFramework.pm index 36c091a111..6ac2f43d8f 100644 --- a/modules/Bio/EnsEMBL/IdMapping/SyntenyFramework.pm +++ b/modules/Bio/EnsEMBL/IdMapping/SyntenyFramework.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/SyntenyRegion.pm b/modules/Bio/EnsEMBL/IdMapping/SyntenyRegion.pm index febc840e5a..4126a9be7e 100644 --- a/modules/Bio/EnsEMBL/IdMapping/SyntenyRegion.pm +++ b/modules/Bio/EnsEMBL/IdMapping/SyntenyRegion.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/TinyExon.pm b/modules/Bio/EnsEMBL/IdMapping/TinyExon.pm index abdaca1086..17a3d60d8f 100644 --- a/modules/Bio/EnsEMBL/IdMapping/TinyExon.pm +++ b/modules/Bio/EnsEMBL/IdMapping/TinyExon.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/TinyFeature.pm b/modules/Bio/EnsEMBL/IdMapping/TinyFeature.pm index f6d6974fd4..1cfb00f211 100644 --- a/modules/Bio/EnsEMBL/IdMapping/TinyFeature.pm +++ b/modules/Bio/EnsEMBL/IdMapping/TinyFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/TinyGene.pm b/modules/Bio/EnsEMBL/IdMapping/TinyGene.pm index f0e5df289b..765be6ce4a 100644 --- a/modules/Bio/EnsEMBL/IdMapping/TinyGene.pm +++ b/modules/Bio/EnsEMBL/IdMapping/TinyGene.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/TinyTranscript.pm b/modules/Bio/EnsEMBL/IdMapping/TinyTranscript.pm index a7e9e8a8c5..e78273b700 100644 --- a/modules/Bio/EnsEMBL/IdMapping/TinyTranscript.pm +++ b/modules/Bio/EnsEMBL/IdMapping/TinyTranscript.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/TinyTranslation.pm b/modules/Bio/EnsEMBL/IdMapping/TinyTranslation.pm index 75a5ee5ce0..3e5facc1ff 100644 --- a/modules/Bio/EnsEMBL/IdMapping/TinyTranslation.pm +++ b/modules/Bio/EnsEMBL/IdMapping/TinyTranslation.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdMapping/TranscriptScoreBuilder.pm b/modules/Bio/EnsEMBL/IdMapping/TranscriptScoreBuilder.pm index 88117bb212..ac1eb430ff 100644 --- a/modules/Bio/EnsEMBL/IdMapping/TranscriptScoreBuilder.pm +++ b/modules/Bio/EnsEMBL/IdMapping/TranscriptScoreBuilder.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IdentityXref.pm b/modules/Bio/EnsEMBL/IdentityXref.pm index 553710ec0a..155ac0d929 100644 --- a/modules/Bio/EnsEMBL/IdentityXref.pm +++ b/modules/Bio/EnsEMBL/IdentityXref.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IndividualSlice.pm b/modules/Bio/EnsEMBL/IndividualSlice.pm index 5f6a60e3aa..a682720a68 100644 --- a/modules/Bio/EnsEMBL/IndividualSlice.pm +++ b/modules/Bio/EnsEMBL/IndividualSlice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/IndividualSliceFactory.pm b/modules/Bio/EnsEMBL/IndividualSliceFactory.pm index 4a817d22a0..6d6ff66306 100644 --- a/modules/Bio/EnsEMBL/IndividualSliceFactory.pm +++ b/modules/Bio/EnsEMBL/IndividualSliceFactory.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Intron.pm b/modules/Bio/EnsEMBL/Intron.pm index cfc258cb63..91f27fd93b 100644 --- a/modules/Bio/EnsEMBL/Intron.pm +++ b/modules/Bio/EnsEMBL/Intron.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/KaryotypeBand.pm b/modules/Bio/EnsEMBL/KaryotypeBand.pm index ce9f791fb4..b7af3c18d1 100644 --- a/modules/Bio/EnsEMBL/KaryotypeBand.pm +++ b/modules/Bio/EnsEMBL/KaryotypeBand.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/LRGSlice.pm b/modules/Bio/EnsEMBL/LRGSlice.pm index f63e467d45..03a6caf3ac 100644 --- a/modules/Bio/EnsEMBL/LRGSlice.pm +++ b/modules/Bio/EnsEMBL/LRGSlice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Lite/DBAdaptor.pm b/modules/Bio/EnsEMBL/Lite/DBAdaptor.pm index 0d1325c620..99136a9d2c 100755 --- a/modules/Bio/EnsEMBL/Lite/DBAdaptor.pm +++ b/modules/Bio/EnsEMBL/Lite/DBAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm b/modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm index 253a05c7af..117e990448 100644 --- a/modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm +++ b/modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/DBSQL/DitagAdaptor.pm b/modules/Bio/EnsEMBL/Map/DBSQL/DitagAdaptor.pm index e90294ec39..1d7805d31d 100644 --- a/modules/Bio/EnsEMBL/Map/DBSQL/DitagAdaptor.pm +++ b/modules/Bio/EnsEMBL/Map/DBSQL/DitagAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/DBSQL/DitagFeatureAdaptor.pm b/modules/Bio/EnsEMBL/Map/DBSQL/DitagFeatureAdaptor.pm index 69fb8535d7..437079a82f 100644 --- a/modules/Bio/EnsEMBL/Map/DBSQL/DitagFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/Map/DBSQL/DitagFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/DBSQL/MarkerAdaptor.pm b/modules/Bio/EnsEMBL/Map/DBSQL/MarkerAdaptor.pm index 5939b9ad35..212165725c 100644 --- a/modules/Bio/EnsEMBL/Map/DBSQL/MarkerAdaptor.pm +++ b/modules/Bio/EnsEMBL/Map/DBSQL/MarkerAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/DBSQL/MarkerFeatureAdaptor.pm b/modules/Bio/EnsEMBL/Map/DBSQL/MarkerFeatureAdaptor.pm index db48dc1534..388b26489d 100644 --- a/modules/Bio/EnsEMBL/Map/DBSQL/MarkerFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/Map/DBSQL/MarkerFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/DBSQL/QtlAdaptor.pm b/modules/Bio/EnsEMBL/Map/DBSQL/QtlAdaptor.pm index b86cf2bb9f..56c78e93af 100644 --- a/modules/Bio/EnsEMBL/Map/DBSQL/QtlAdaptor.pm +++ b/modules/Bio/EnsEMBL/Map/DBSQL/QtlAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/DBSQL/QtlFeatureAdaptor.pm b/modules/Bio/EnsEMBL/Map/DBSQL/QtlFeatureAdaptor.pm index 7c2ae1adda..b262d4e205 100644 --- a/modules/Bio/EnsEMBL/Map/DBSQL/QtlFeatureAdaptor.pm +++ b/modules/Bio/EnsEMBL/Map/DBSQL/QtlFeatureAdaptor.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/Ditag.pm b/modules/Bio/EnsEMBL/Map/Ditag.pm index addc8f7069..6650006972 100644 --- a/modules/Bio/EnsEMBL/Map/Ditag.pm +++ b/modules/Bio/EnsEMBL/Map/Ditag.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/DitagFeature.pm b/modules/Bio/EnsEMBL/Map/DitagFeature.pm index 733653934e..a477967ab3 100644 --- a/modules/Bio/EnsEMBL/Map/DitagFeature.pm +++ b/modules/Bio/EnsEMBL/Map/DitagFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/MapLocation.pm b/modules/Bio/EnsEMBL/Map/MapLocation.pm index 86d279d68f..1e94af4a85 100644 --- a/modules/Bio/EnsEMBL/Map/MapLocation.pm +++ b/modules/Bio/EnsEMBL/Map/MapLocation.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/Marker.pm b/modules/Bio/EnsEMBL/Map/Marker.pm index eba279ab4d..bb6785f18f 100644 --- a/modules/Bio/EnsEMBL/Map/Marker.pm +++ b/modules/Bio/EnsEMBL/Map/Marker.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/MarkerFeature.pm b/modules/Bio/EnsEMBL/Map/MarkerFeature.pm index 2f5f912855..949987c171 100644 --- a/modules/Bio/EnsEMBL/Map/MarkerFeature.pm +++ b/modules/Bio/EnsEMBL/Map/MarkerFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/MarkerSynonym.pm b/modules/Bio/EnsEMBL/Map/MarkerSynonym.pm index 27c82f9e58..0c7fca6f8a 100644 --- a/modules/Bio/EnsEMBL/Map/MarkerSynonym.pm +++ b/modules/Bio/EnsEMBL/Map/MarkerSynonym.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/Qtl.pm b/modules/Bio/EnsEMBL/Map/Qtl.pm index 39493adff3..1fa2d67725 100644 --- a/modules/Bio/EnsEMBL/Map/Qtl.pm +++ b/modules/Bio/EnsEMBL/Map/Qtl.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Map/QtlFeature.pm b/modules/Bio/EnsEMBL/Map/QtlFeature.pm index d109a63621..5697b89531 100644 --- a/modules/Bio/EnsEMBL/Map/QtlFeature.pm +++ b/modules/Bio/EnsEMBL/Map/QtlFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/MappedSlice.pm b/modules/Bio/EnsEMBL/MappedSlice.pm index 9cd6652ace..0c570cb266 100644 --- a/modules/Bio/EnsEMBL/MappedSlice.pm +++ b/modules/Bio/EnsEMBL/MappedSlice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/MappedSliceContainer.pm b/modules/Bio/EnsEMBL/MappedSliceContainer.pm index 4a5b895754..562539bf5e 100644 --- a/modules/Bio/EnsEMBL/MappedSliceContainer.pm +++ b/modules/Bio/EnsEMBL/MappedSliceContainer.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Mapper.pm b/modules/Bio/EnsEMBL/Mapper.pm index c934618e8e..d5d3a307d2 100644 --- a/modules/Bio/EnsEMBL/Mapper.pm +++ b/modules/Bio/EnsEMBL/Mapper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Mapper/Coordinate.pm b/modules/Bio/EnsEMBL/Mapper/Coordinate.pm index 24d64c47f4..36016256cf 100644 --- a/modules/Bio/EnsEMBL/Mapper/Coordinate.pm +++ b/modules/Bio/EnsEMBL/Mapper/Coordinate.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Mapper/Gap.pm b/modules/Bio/EnsEMBL/Mapper/Gap.pm index 2a8c60773a..b435eac8b2 100644 --- a/modules/Bio/EnsEMBL/Mapper/Gap.pm +++ b/modules/Bio/EnsEMBL/Mapper/Gap.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Mapper/IndelCoordinate.pm b/modules/Bio/EnsEMBL/Mapper/IndelCoordinate.pm index 45685ed270..2ae2fd014d 100644 --- a/modules/Bio/EnsEMBL/Mapper/IndelCoordinate.pm +++ b/modules/Bio/EnsEMBL/Mapper/IndelCoordinate.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Mapper/IndelPair.pm b/modules/Bio/EnsEMBL/Mapper/IndelPair.pm index 73e7873839..186ba97a9d 100644 --- a/modules/Bio/EnsEMBL/Mapper/IndelPair.pm +++ b/modules/Bio/EnsEMBL/Mapper/IndelPair.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Mapper/Pair.pm b/modules/Bio/EnsEMBL/Mapper/Pair.pm index b47c46550a..13ac29a6be 100644 --- a/modules/Bio/EnsEMBL/Mapper/Pair.pm +++ b/modules/Bio/EnsEMBL/Mapper/Pair.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Mapper/RangeRegistry.pm b/modules/Bio/EnsEMBL/Mapper/RangeRegistry.pm index b53eb490fc..fd3e6f0011 100644 --- a/modules/Bio/EnsEMBL/Mapper/RangeRegistry.pm +++ b/modules/Bio/EnsEMBL/Mapper/RangeRegistry.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Mapper/Unit.pm b/modules/Bio/EnsEMBL/Mapper/Unit.pm index 1e455e57ed..be5c71a415 100644 --- a/modules/Bio/EnsEMBL/Mapper/Unit.pm +++ b/modules/Bio/EnsEMBL/Mapper/Unit.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/MiscFeature.pm b/modules/Bio/EnsEMBL/MiscFeature.pm index 66aaf1ea3d..0835838cf7 100644 --- a/modules/Bio/EnsEMBL/MiscFeature.pm +++ b/modules/Bio/EnsEMBL/MiscFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/MiscSet.pm b/modules/Bio/EnsEMBL/MiscSet.pm index 155115005a..28c949b2b2 100644 --- a/modules/Bio/EnsEMBL/MiscSet.pm +++ b/modules/Bio/EnsEMBL/MiscSet.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/OntologyTerm.pm b/modules/Bio/EnsEMBL/OntologyTerm.pm index cd782be00d..1e5eed01be 100644 --- a/modules/Bio/EnsEMBL/OntologyTerm.pm +++ b/modules/Bio/EnsEMBL/OntologyTerm.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/OntologyXref.pm b/modules/Bio/EnsEMBL/OntologyXref.pm index 7c29c43396..9f6585da7c 100644 --- a/modules/Bio/EnsEMBL/OntologyXref.pm +++ b/modules/Bio/EnsEMBL/OntologyXref.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/PepDnaAlignFeature.pm b/modules/Bio/EnsEMBL/PepDnaAlignFeature.pm index fcd7cd294d..27780ec442 100644 --- a/modules/Bio/EnsEMBL/PepDnaAlignFeature.pm +++ b/modules/Bio/EnsEMBL/PepDnaAlignFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/PredictionExon.pm b/modules/Bio/EnsEMBL/PredictionExon.pm index f5f1e0424c..04648c4843 100644 --- a/modules/Bio/EnsEMBL/PredictionExon.pm +++ b/modules/Bio/EnsEMBL/PredictionExon.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/PredictionTranscript.pm b/modules/Bio/EnsEMBL/PredictionTranscript.pm index d096660334..a23a55b8f0 100644 --- a/modules/Bio/EnsEMBL/PredictionTranscript.pm +++ b/modules/Bio/EnsEMBL/PredictionTranscript.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/ProjectionSegment.pm b/modules/Bio/EnsEMBL/ProjectionSegment.pm index 69a012737c..01b8db865c 100644 --- a/modules/Bio/EnsEMBL/ProjectionSegment.pm +++ b/modules/Bio/EnsEMBL/ProjectionSegment.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/ProteinFeature.pm b/modules/Bio/EnsEMBL/ProteinFeature.pm index d9b5368c34..6f678279e3 100755 --- a/modules/Bio/EnsEMBL/ProteinFeature.pm +++ b/modules/Bio/EnsEMBL/ProteinFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Registry.pm b/modules/Bio/EnsEMBL/Registry.pm index e19d6db9b2..9991cda817 100644 --- a/modules/Bio/EnsEMBL/Registry.pm +++ b/modules/Bio/EnsEMBL/Registry.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/RepeatConsensus.pm b/modules/Bio/EnsEMBL/RepeatConsensus.pm index 74890e8e20..3705c52a52 100644 --- a/modules/Bio/EnsEMBL/RepeatConsensus.pm +++ b/modules/Bio/EnsEMBL/RepeatConsensus.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/RepeatFeature.pm b/modules/Bio/EnsEMBL/RepeatFeature.pm index 2a49e599a3..b886ece048 100644 --- a/modules/Bio/EnsEMBL/RepeatFeature.pm +++ b/modules/Bio/EnsEMBL/RepeatFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/RepeatMaskedSlice.pm b/modules/Bio/EnsEMBL/RepeatMaskedSlice.pm index 993146d323..29f282dd28 100644 --- a/modules/Bio/EnsEMBL/RepeatMaskedSlice.pm +++ b/modules/Bio/EnsEMBL/RepeatMaskedSlice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Root.pm b/modules/Bio/EnsEMBL/Root.pm index 02dba44107..a53882e468 100644 --- a/modules/Bio/EnsEMBL/Root.pm +++ b/modules/Bio/EnsEMBL/Root.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SNP.pm b/modules/Bio/EnsEMBL/SNP.pm index 5437bef030..6245b3bb1c 100644 --- a/modules/Bio/EnsEMBL/SNP.pm +++ b/modules/Bio/EnsEMBL/SNP.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SeqEdit.pm b/modules/Bio/EnsEMBL/SeqEdit.pm index 4a95922a07..5ab6940cdc 100644 --- a/modules/Bio/EnsEMBL/SeqEdit.pm +++ b/modules/Bio/EnsEMBL/SeqEdit.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SeqFeature.pm b/modules/Bio/EnsEMBL/SeqFeature.pm index d093fd36f3..ef084f2c6e 100755 --- a/modules/Bio/EnsEMBL/SeqFeature.pm +++ b/modules/Bio/EnsEMBL/SeqFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SeqFeatureI.pm b/modules/Bio/EnsEMBL/SeqFeatureI.pm index fb94c91d96..edeade9d05 100755 --- a/modules/Bio/EnsEMBL/SeqFeatureI.pm +++ b/modules/Bio/EnsEMBL/SeqFeatureI.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SeqRegionSynonym.pm b/modules/Bio/EnsEMBL/SeqRegionSynonym.pm index ba08f8d5bb..57d4296095 100644 --- a/modules/Bio/EnsEMBL/SeqRegionSynonym.pm +++ b/modules/Bio/EnsEMBL/SeqRegionSynonym.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SimpleFeature.pm b/modules/Bio/EnsEMBL/SimpleFeature.pm index ac88f00453..3a269df237 100644 --- a/modules/Bio/EnsEMBL/SimpleFeature.pm +++ b/modules/Bio/EnsEMBL/SimpleFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Slice.pm b/modules/Bio/EnsEMBL/Slice.pm index 01489726d4..ecc9d32e91 100644 --- a/modules/Bio/EnsEMBL/Slice.pm +++ b/modules/Bio/EnsEMBL/Slice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SplicingEvent.pm b/modules/Bio/EnsEMBL/SplicingEvent.pm index d493fbf6e2..c49684e5d4 100644 --- a/modules/Bio/EnsEMBL/SplicingEvent.pm +++ b/modules/Bio/EnsEMBL/SplicingEvent.pm @@ -1,7 +1,7 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SplicingEventFeature.pm b/modules/Bio/EnsEMBL/SplicingEventFeature.pm index 32ec6967b8..0cb5b7616c 100644 --- a/modules/Bio/EnsEMBL/SplicingEventFeature.pm +++ b/modules/Bio/EnsEMBL/SplicingEventFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/SplicingTranscriptPair.pm b/modules/Bio/EnsEMBL/SplicingTranscriptPair.pm index acdd875aff..0604e822e4 100644 --- a/modules/Bio/EnsEMBL/SplicingTranscriptPair.pm +++ b/modules/Bio/EnsEMBL/SplicingTranscriptPair.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/StableIdEvent.pm b/modules/Bio/EnsEMBL/StableIdEvent.pm index bacca9b438..149cb51323 100644 --- a/modules/Bio/EnsEMBL/StableIdEvent.pm +++ b/modules/Bio/EnsEMBL/StableIdEvent.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/StableIdHistoryTree.pm b/modules/Bio/EnsEMBL/StableIdHistoryTree.pm index ad241a12f4..33a06ad222 100644 --- a/modules/Bio/EnsEMBL/StableIdHistoryTree.pm +++ b/modules/Bio/EnsEMBL/StableIdHistoryTree.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Storable.pm b/modules/Bio/EnsEMBL/Storable.pm index d7b48d0226..8266db8315 100644 --- a/modules/Bio/EnsEMBL/Storable.pm +++ b/modules/Bio/EnsEMBL/Storable.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/StrainSlice.pm b/modules/Bio/EnsEMBL/StrainSlice.pm index fd75ca5299..29b35e5afd 100644 --- a/modules/Bio/EnsEMBL/StrainSlice.pm +++ b/modules/Bio/EnsEMBL/StrainSlice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/TopLevelAssemblyMapper.pm b/modules/Bio/EnsEMBL/TopLevelAssemblyMapper.pm index c2794c684c..6d2b07d7c9 100644 --- a/modules/Bio/EnsEMBL/TopLevelAssemblyMapper.pm +++ b/modules/Bio/EnsEMBL/TopLevelAssemblyMapper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Transcript.pm b/modules/Bio/EnsEMBL/Transcript.pm index d7f4bfa238..8b77490517 100755 --- a/modules/Bio/EnsEMBL/Transcript.pm +++ b/modules/Bio/EnsEMBL/Transcript.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/TranscriptFactory.pm b/modules/Bio/EnsEMBL/TranscriptFactory.pm index eaefd4089c..8ff2a2df59 100755 --- a/modules/Bio/EnsEMBL/TranscriptFactory.pm +++ b/modules/Bio/EnsEMBL/TranscriptFactory.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/TranscriptMapper.pm b/modules/Bio/EnsEMBL/TranscriptMapper.pm index 43dc363211..4cb9b02b60 100644 --- a/modules/Bio/EnsEMBL/TranscriptMapper.pm +++ b/modules/Bio/EnsEMBL/TranscriptMapper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Translation.pm b/modules/Bio/EnsEMBL/Translation.pm index ca2e5196a0..83279690c5 100755 --- a/modules/Bio/EnsEMBL/Translation.pm +++ b/modules/Bio/EnsEMBL/Translation.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/UnconventionalTranscriptAssociation.pm b/modules/Bio/EnsEMBL/UnconventionalTranscriptAssociation.pm index eda9324de8..65ea48f0be 100644 --- a/modules/Bio/EnsEMBL/UnconventionalTranscriptAssociation.pm +++ b/modules/Bio/EnsEMBL/UnconventionalTranscriptAssociation.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/UnmappedObject.pm b/modules/Bio/EnsEMBL/UnmappedObject.pm index 526bd2eec7..313f5e3a0e 100644 --- a/modules/Bio/EnsEMBL/UnmappedObject.pm +++ b/modules/Bio/EnsEMBL/UnmappedObject.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Upstream.pm b/modules/Bio/EnsEMBL/Upstream.pm index 11ba8b069d..d2719bee82 100644 --- a/modules/Bio/EnsEMBL/Upstream.pm +++ b/modules/Bio/EnsEMBL/Upstream.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Argument.pm b/modules/Bio/EnsEMBL/Utils/Argument.pm index d944afbf47..f7babd2f9a 100644 --- a/modules/Bio/EnsEMBL/Utils/Argument.pm +++ b/modules/Bio/EnsEMBL/Utils/Argument.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/AssemblyProjector.pm b/modules/Bio/EnsEMBL/Utils/AssemblyProjector.pm index 5ff469d91c..638feaad46 100644 --- a/modules/Bio/EnsEMBL/Utils/AssemblyProjector.pm +++ b/modules/Bio/EnsEMBL/Utils/AssemblyProjector.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/BitString.pm b/modules/Bio/EnsEMBL/Utils/BitString.pm index 1e3dcd9f3b..1b4440f48d 100755 --- a/modules/Bio/EnsEMBL/Utils/BitString.pm +++ b/modules/Bio/EnsEMBL/Utils/BitString.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/CigarString.pm b/modules/Bio/EnsEMBL/Utils/CigarString.pm index 9fd3de98d6..4759a0fd0b 100644 --- a/modules/Bio/EnsEMBL/Utils/CigarString.pm +++ b/modules/Bio/EnsEMBL/Utils/CigarString.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Collector.pm b/modules/Bio/EnsEMBL/Utils/Collector.pm index 507d1ef5b0..513fe5a57c 100644 --- a/modules/Bio/EnsEMBL/Utils/Collector.pm +++ b/modules/Bio/EnsEMBL/Utils/Collector.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/ConfParser.pm b/modules/Bio/EnsEMBL/Utils/ConfParser.pm index 82041233e7..008b4310d0 100644 --- a/modules/Bio/EnsEMBL/Utils/ConfParser.pm +++ b/modules/Bio/EnsEMBL/Utils/ConfParser.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/ConfigRegistry.pm b/modules/Bio/EnsEMBL/Utils/ConfigRegistry.pm index 7d5443b819..4eee78fff6 100644 --- a/modules/Bio/EnsEMBL/Utils/ConfigRegistry.pm +++ b/modules/Bio/EnsEMBL/Utils/ConfigRegistry.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/ConversionSupport.pm b/modules/Bio/EnsEMBL/Utils/ConversionSupport.pm index 6c3b44f1e8..c82f6cea37 100644 --- a/modules/Bio/EnsEMBL/Utils/ConversionSupport.pm +++ b/modules/Bio/EnsEMBL/Utils/ConversionSupport.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter.pm b/modules/Bio/EnsEMBL/Utils/Converter.pm index 2aec0beffb..9952018888 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens.pm index 82628666d0..53511b3e52 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_analysis.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_analysis.pm index 412d9accec..bfb5f2aaad 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_analysis.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_analysis.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm index 72ed678f50..e38a6ae0fb 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_exon.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_featurePair.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_featurePair.pm index deee09e5ef..3ecce405ca 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_featurePair.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_featurePair.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_gene.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_gene.pm index c673daab04..2e025b4808 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_gene.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_gene.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hit.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hit.pm index 8312b98c51..23f3896685 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hit.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hit.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hsp.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hsp.pm index b62395b122..4ac5321a47 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hsp.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_hsp.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionExon.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionExon.pm index 29ba0b8500..a7bbf30cff 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionExon.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionExon.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm index 7dc9eba1ea..37de5d994a 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_predictionGene.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_seqFeature.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_seqFeature.pm index e85627b070..7fad7c3450 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_seqFeature.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_seqFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_transcript.pm b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_transcript.pm index 4ad45d026e..a25263421c 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_transcript.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/bio_ens_transcript.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/ens_bio.pm b/modules/Bio/EnsEMBL/Utils/Converter/ens_bio.pm index b76c4e1d5c..766624eeec 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/ens_bio.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/ens_bio.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/ens_bio_featurePair.pm b/modules/Bio/EnsEMBL/Utils/Converter/ens_bio_featurePair.pm index 01cfad7098..1bd92c44bb 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/ens_bio_featurePair.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/ens_bio_featurePair.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Converter/ens_bio_seqFeature.pm b/modules/Bio/EnsEMBL/Utils/Converter/ens_bio_seqFeature.pm index 105300f915..6d535ee7fb 100644 --- a/modules/Bio/EnsEMBL/Utils/Converter/ens_bio_seqFeature.pm +++ b/modules/Bio/EnsEMBL/Utils/Converter/ens_bio_seqFeature.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/EasyArgv.pm b/modules/Bio/EnsEMBL/Utils/EasyArgv.pm index 01d1e27d1d..bdd19295be 100644 --- a/modules/Bio/EnsEMBL/Utils/EasyArgv.pm +++ b/modules/Bio/EnsEMBL/Utils/EasyArgv.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Eprof.pm b/modules/Bio/EnsEMBL/Utils/Eprof.pm index efe0df96a2..b7818aec64 100755 --- a/modules/Bio/EnsEMBL/Utils/Eprof.pm +++ b/modules/Bio/EnsEMBL/Utils/Eprof.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/EprofStack.pm b/modules/Bio/EnsEMBL/Utils/EprofStack.pm index d47b317d9f..6b4e2047d2 100755 --- a/modules/Bio/EnsEMBL/Utils/EprofStack.pm +++ b/modules/Bio/EnsEMBL/Utils/EprofStack.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Exception.pm b/modules/Bio/EnsEMBL/Utils/Exception.pm index 7ee492b4b8..4d5100d605 100644 --- a/modules/Bio/EnsEMBL/Utils/Exception.pm +++ b/modules/Bio/EnsEMBL/Utils/Exception.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Logger.pm b/modules/Bio/EnsEMBL/Utils/Logger.pm index 688a999c58..2daeb28c98 100644 --- a/modules/Bio/EnsEMBL/Utils/Logger.pm +++ b/modules/Bio/EnsEMBL/Utils/Logger.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/PolyA.pm b/modules/Bio/EnsEMBL/Utils/PolyA.pm index 0351a850ac..6e9b634369 100644 --- a/modules/Bio/EnsEMBL/Utils/PolyA.pm +++ b/modules/Bio/EnsEMBL/Utils/PolyA.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Scalar.pm b/modules/Bio/EnsEMBL/Utils/Scalar.pm index 878cd81531..ce5ccef01a 100644 --- a/modules/Bio/EnsEMBL/Utils/Scalar.pm +++ b/modules/Bio/EnsEMBL/Utils/Scalar.pm @@ -4,7 +4,7 @@ package Bio::EnsEMBL::Utils::Scalar; =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/SchemaConversion.pm b/modules/Bio/EnsEMBL/Utils/SchemaConversion.pm index 15ab49afab..0557fb36ad 100644 --- a/modules/Bio/EnsEMBL/Utils/SchemaConversion.pm +++ b/modules/Bio/EnsEMBL/Utils/SchemaConversion.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/ScriptUtils.pm b/modules/Bio/EnsEMBL/Utils/ScriptUtils.pm index f4cc8f1de5..90179650e7 100644 --- a/modules/Bio/EnsEMBL/Utils/ScriptUtils.pm +++ b/modules/Bio/EnsEMBL/Utils/ScriptUtils.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/SeqDumper.pm b/modules/Bio/EnsEMBL/Utils/SeqDumper.pm index dca6976845..acd6200b9e 100644 --- a/modules/Bio/EnsEMBL/Utils/SeqDumper.pm +++ b/modules/Bio/EnsEMBL/Utils/SeqDumper.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/SeqRegionCache.pm b/modules/Bio/EnsEMBL/Utils/SeqRegionCache.pm index 763a5fdf33..29c74b61c4 100644 --- a/modules/Bio/EnsEMBL/Utils/SeqRegionCache.pm +++ b/modules/Bio/EnsEMBL/Utils/SeqRegionCache.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Sequence.pm b/modules/Bio/EnsEMBL/Utils/Sequence.pm index 3b840fd0f0..6032f24b65 100644 --- a/modules/Bio/EnsEMBL/Utils/Sequence.pm +++ b/modules/Bio/EnsEMBL/Utils/Sequence.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/Slice.pm b/modules/Bio/EnsEMBL/Utils/Slice.pm index 94e4010971..32479b6266 100644 --- a/modules/Bio/EnsEMBL/Utils/Slice.pm +++ b/modules/Bio/EnsEMBL/Utils/Slice.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/SqlHelper.pm b/modules/Bio/EnsEMBL/Utils/SqlHelper.pm index bc49f5ec4f..9c6c001b41 100644 --- a/modules/Bio/EnsEMBL/Utils/SqlHelper.pm +++ b/modules/Bio/EnsEMBL/Utils/SqlHelper.pm @@ -4,7 +4,7 @@ package Bio::EnsEMBL::Utils::SqlHelper; =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/TranscriptAlleles.pm b/modules/Bio/EnsEMBL/Utils/TranscriptAlleles.pm index b9180f3c7d..c1c7ac0326 100644 --- a/modules/Bio/EnsEMBL/Utils/TranscriptAlleles.pm +++ b/modules/Bio/EnsEMBL/Utils/TranscriptAlleles.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/TranscriptSNPs.pm b/modules/Bio/EnsEMBL/Utils/TranscriptSNPs.pm index f43c906390..65fb18275b 100644 --- a/modules/Bio/EnsEMBL/Utils/TranscriptSNPs.pm +++ b/modules/Bio/EnsEMBL/Utils/TranscriptSNPs.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/User_defined_load.pm b/modules/Bio/EnsEMBL/Utils/User_defined_load.pm index 6507571775..f99b9413d7 100644 --- a/modules/Bio/EnsEMBL/Utils/User_defined_load.pm +++ b/modules/Bio/EnsEMBL/Utils/User_defined_load.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/VegaCuration/Gene.pm b/modules/Bio/EnsEMBL/Utils/VegaCuration/Gene.pm index 6a19ac58c6..7a3c6507b7 100644 --- a/modules/Bio/EnsEMBL/Utils/VegaCuration/Gene.pm +++ b/modules/Bio/EnsEMBL/Utils/VegaCuration/Gene.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/VegaCuration/Transcript.pm b/modules/Bio/EnsEMBL/Utils/VegaCuration/Transcript.pm index 37a6d71192..02aa33e7cc 100644 --- a/modules/Bio/EnsEMBL/Utils/VegaCuration/Transcript.pm +++ b/modules/Bio/EnsEMBL/Utils/VegaCuration/Transcript.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. diff --git a/modules/Bio/EnsEMBL/Utils/VegaCuration/Translation.pm b/modules/Bio/EnsEMBL/Utils/VegaCuration/Translation.pm index f2027e6ad4..fe949deeed 100644 --- a/modules/Bio/EnsEMBL/Utils/VegaCuration/Translation.pm +++ b/modules/Bio/EnsEMBL/Utils/VegaCuration/Translation.pm @@ -1,6 +1,6 @@ =head1 LICENSE - Copyright (c) 1999-2010 The European Bioinformatics Institute and + Copyright (c) 1999-2011 The European Bioinformatics Institute and Genome Research Limited. All rights reserved. This software is distributed under a modified Apache license. For license details, please see -- GitLab