From 17432a9a9829533f81390a0343849e8aec0d118b Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Thu, 20 Jul 2017 09:16:59 +0100
Subject: [PATCH] ENSCORESW-2355: order by highest score for reproducible
results
---
misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm b/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm
index b2911637a4..dbb411b85c 100644
--- a/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/RefSeqCoordinateParser.pm
@@ -316,7 +316,7 @@ sub run_script {
my ($score, $tl_score);
# Comparing the scores based on coding exon overlap
# If there is a stale mate, chose best exon overlap score
- foreach my $tid (keys(%transcript_result)) {
+ foreach my $tid (sort { $transcript_result{$b} <=> $transcript_result{$a} } keys(%transcript_result)) {
$score = $transcript_result{$tid};
$tl_score = $tl_transcript_result{$tid};
if ($score > $transcript_score_threshold || $tl_score > $tl_transcript_score_threshold) {
--
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