diff --git a/misc-scripts/surgery/SeqStoreConverter/vega/DanioRerio.pm b/misc-scripts/surgery/SeqStoreConverter/vega/DanioRerio.pm
index 45c31fe7ed65ae53a157b3df644a97ff9dce000e..871cba8b6fb3d94da227d3b16a3da97062315878 100644
--- a/misc-scripts/surgery/SeqStoreConverter/vega/DanioRerio.pm
+++ b/misc-scripts/surgery/SeqStoreConverter/vega/DanioRerio.pm
@@ -67,49 +67,52 @@ sub update_clone_info {
   $self->debug("Danio_specific - Transforming clone_id into seq_region_id for clone_info and current_clone_info");
 
   foreach my $table_name ('clone_info','current_clone_info') {
-    my $select_st1 = 
+      my $select_st1 = 
       "SELECT ctg.name, ctg.clone_id " .
       "FROM   $source.contig ctg, $source.$table_name ci " .
       "WHERE  ctg.clone_id = ci.clone_id " .
       "AND ctg.name not like 'ctg%' " .
       "AND ctg.name not like 'NA%'";
-
-    my $query_results1 = $dbh->selectall_arrayref($select_st1);
-
-    my $i = 0;
-    foreach my $contig_name (@$query_results1) {
-      my $embl_acc = $contig_name->[0];
-      my $select_st2 = 
-	"SELECT sr.seq_region_id " .
-	"FROM $target.seq_region sr " . 
-	"WHERE sr.name = '$embl_acc'";
-      my @query_results2 = $dbh->selectrow_array($select_st2);
-      push @{$query_results1->[$i]},@query_results2;
-      $i++;
-    }
-
-    foreach my $clone (@$query_results1) {
-      my $seq_reg_id = $clone->[2];
-      my $clone_id = $clone->[1];
-
-      my $update_query = 
-	"UPDATE $target.$table_name " .
-	"SET clone_id = '$seq_reg_id' " .
-	"WHERE clone_id = '$clone_id'";
-      $dbh->do($update_query);
-    }
-    my $alter_struct_1 = 
+      
+      my $query_results1 = $dbh->selectall_arrayref($select_st1);
+      
+      my $i = 0;
+      foreach my $contig_name (@$query_results1) {
+	  my $embl_acc = $contig_name->[0];
+	  my $select_st2 = 
+	  "SELECT sr.seq_region_id " .
+	  "FROM $target.seq_region sr " . 
+	  "WHERE sr.name = '$embl_acc'";
+	  my @query_results2 = $dbh->selectrow_array($select_st2);
+	  push @{$query_results1->[$i]},@query_results2;
+	  $i++;
+      }
+      
+      foreach my $clone (@$query_results1) {
+	  my $seq_reg_id = $clone->[2];
+	  my $clone_id = $clone->[1];
+	  
+	  my $update_query = 
+	  "UPDATE $target.$table_name " .
+	  "SET clone_id = '$seq_reg_id' " .
+	  "WHERE clone_id = '$clone_id'";
+	  $dbh->do($update_query);
+      }
+      my $alter_struct_1 = 
       "ALTER table $target.$table_name " .
       "CHANGE clone_id seq_region_id int(10) not null";
-    my $alter_struct_2 = 
+      my $alter_struct_2 = 
       "ALTER table $target.$table_name " .
       "add unique index (seq_region_id)";
-    $dbh->do($alter_struct_1);
-    $dbh->do($alter_struct_2);
-
+      $dbh->do($alter_struct_1);
+      $dbh->do($alter_struct_2);
   }
+}
 
-  return;
+sub remove_supercontigs {
+    my $self = shift;
+    my $target = $self->target();
+    $self->debug("Vega Danio specific - NO supercontigs removed from $target");
 }
 
 1;