From 1e445dacf0f79c00d4879fa535a5dece096ee1e4 Mon Sep 17 00:00:00 2001
From: Rhoda Kinsella <rhoda@ebi.ac.uk>
Date: Tue, 10 Apr 2012 10:32:05 +0000
Subject: [PATCH] Added memory requirements and added the Nile tilapia to the
projection species list.
---
misc-scripts/xref_projection/submit_projections.pl | 8 +++++---
1 file changed, 5 insertions(+), 3 deletions(-)
diff --git a/misc-scripts/xref_projection/submit_projections.pl b/misc-scripts/xref_projection/submit_projections.pl
index 0de7b7d216..f361bd8165 100644
--- a/misc-scripts/xref_projection/submit_projections.pl
+++ b/misc-scripts/xref_projection/submit_projections.pl
@@ -59,7 +59,7 @@ if (! -e $dir) {
my $script_opts = "-conf '$conf' -registryconf '$registryconf' -version '$release' -release '$release' -quiet";
my $bsub_opts = "";
-$bsub_opts .= "-R'select[myens_staging<$limit]'";
+$bsub_opts .= "-M2000000 -R'select[mem>2000] rusage[mem=2000]'";
my @names_1_1 = (["human", "chimp" ],
@@ -112,6 +112,7 @@ my @names_1_many = (["human", "zebrafish" ],
["human", "fugu" ],
["human", "lamprey" ],
["human", "cod" ],
+ ["human", "tilapia" ],
["human", "stickleback"]);
my @go_terms = (["human", "mouse" ],
@@ -204,8 +205,9 @@ my @go_terms = (["human", "mouse" ],
["zebrafish", "tetraodon" ],
["zebrafish", "stickleback"],
["zebrafish", "lamprey" ],
- ["zebrafish", "cod" ],
- ["zebrafish", "coelacanth" ],
+ ["zebrafish", "cod" ],
+ ["zebrafish", "coelacanth" ],
+ ["zebrafish", "tilapia" ],
["human", "stickleback" ],
["mouse", "stickleback" ],
["mouse", "turkey" ],
--
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