From 1ec81a3933e8ca12e5d2c152bc3ad1d1a1cef90b Mon Sep 17 00:00:00 2001
From: Monika Komorowska <mk8@sanger.ac.uk>
Date: Tue, 6 Mar 2012 12:11:48 +0000
Subject: [PATCH] added examples of commmands to ontlogy database creation
instructions
---
misc-scripts/ontology/README | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/misc-scripts/ontology/README b/misc-scripts/ontology/README
index 2ef90d4023..21a50e9f85 100644
--- a/misc-scripts/ontology/README
+++ b/misc-scripts/ontology/README
@@ -229,14 +229,11 @@
CREATING THE ONTOLOGY DATABASE
--------------------------------------------------------------------
- Create the database on ens-staging1 and copy to ens-staging2 using
- ensembl/misc-srcipts/CopyDBOverServer.pl script.
-
To create the ensembl_ontology_NN database for a release, the
following steps needs to be followed:
1. Create the empty database by doing "CREATE DATABASE
- ensembl_ontology_NN" (where 'NN' is the current release).
+ ensembl_ontology_NN" (where 'NN' is the current release) on ens-staging1.
2. Load the schema from 'tables.sql' located in
ensembl/misc-scripts/ontology/sql/
@@ -270,7 +267,7 @@
e.g.: perl add_subset_maps.pl -h ens-staging1 -u ensadmin -p ensembl -d ensembl_ontology_67
- 8. Done.
+ 8. Copy the newly created database to ens-staging2 using ensembl/misc-srcipts/CopyDBOverServer.pl script.
$Id$
--
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