Commit 25ae6695 authored by Steve Trevanion's avatar Steve Trevanion
Browse files

vega changes

parent ca5fb344
......@@ -105,8 +105,8 @@
34 NovPTCount processed_transcript_NOVEL Number of Novel Processed Transcripts
35 PutPTCount processed_transcript_PUTATIVE Number of Putative Processed Transcripts
36 PredPCCount protein_coding_PREDICTED Number of Predicted Protein Coding
37 NovIGGeneCount IG_gene_NOVEL Number of Novel IG Genes
38 NovIGPsGenCount IG_pseudogene_NOVEL Number of Novel IG Pseudogenes
37 IGGeneCount IG_gene Number of IG Genes
38 IGPsGenCount IG_pseudogene Number of IG Pseudogenes
39 TotPsCount total_pseudogene Total Number of Pseudogenes
40 KnwnProcPsCount processed_pseudogene Number of Known Processed Pseudogenes
41 KnwnUnPsCount unprocessed_pseudogene Number of Known Unprocessed Pseudogenes
......@@ -257,19 +257,19 @@
# vega
148 TotAssLength Finished sequence length Finished Sequence
149 NovPsCount novel_pseudogene Number of Novel Pseudogenes
149 PsCount pseudogene Number of Pseudogenes
150 KnwnPsCount known_pseudogene Number of Known Pseudogenes
151 KnwnTPsCount known_transcribed_pseudogene Number of Known Transcribed Pseudogenes
152 TotPTCount total_processed_transcript Total Number of Processed Transcripts
153 TotPCCount total_protein_coding Total Number of Protein Coding
154 NovNcCount novel_non_coding Number of Novel Non Coding
155 KnwnPolyPsCount known_polymorphic Number of Known Polymorphic Pseudogenes
156 NovPolyPsCount novel_polymorphic Number of Novel Polymorphic Pseudogenes
156 PolyPsCount polymorphic_pseudogene Number of Polymorphic Pseudogenes
157 TotIGGeneCount total_IG_gene Total Number of IG Genes
158 NovProcPsCount novel_processed_pseudogene Number of Novel Processed Pseudogenes
159 NovUnPsCount novel_unprocessed_pseudogene Number of Novel Unprocessed Pseudogenes
160 NovTPsCount novel_transcribed_pseudogene Number of Novel Transcribed Pseudogenes
161 NovTECCount novel_TEC Number of Novel TEC Genes
158 ProcPsCount proc_pseudogene Number of Processed Pseudogenes
159 UnPsCount unproc_pseudogene Number of Unprocessed Pseudogenes
160 TPsCount transcribed_pseudogene Number of Transcribed Pseudogenes
161 TECCount TEC Number of TEC Genes
162 KnwnIGGeneCount IG_gene_KNOWN Number of Known IG Genes
163 KnwnIGPsGeCount IG_pseudogene_KNOWN Number of Known IG Pseudogenes
......@@ -302,8 +302,8 @@
174 upstream_ATG upstream ATG Alternative ATG found upstream of the defined as start ATG for the transcript
#more vega gene types
175 NovTPPsCount transcribed_processed_pseudogene_NOVEL Number of Transcribed processed pseudogenes
176 NovTUPsCount transcribed_unprocessed_pseudogene_NOVEL Number of Transcribed unprocessed pseudogenes
177 NovUniPsCount unitary_pseudogene_NOVEL Number of Novel Unitary pseudogenes
175 TPPsCount transcribed_processed_pseudogene Number of Transcribed processed pseudogenes
176 TUPsCount transcribed_unprocessed_pseudogene Number of Transcribed unprocessed pseudogenes
177 UniPsCount unitary_pseudogene Number of Unitary pseudogenes
178 KnwnTECCount TEC_KNOWN Number of Known TEC genes
179 TotTECGeneCount TEC_all Total number of TEC genes
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