From 25d9b4fdbcb059931462e0c2642a7daf8c8ff180 Mon Sep 17 00:00:00 2001 From: Monika Komorowska <mk8@sanger.ac.uk> Date: Tue, 24 May 2011 12:06:58 +0000 Subject: [PATCH] Deleted data for dbprimary_acc_linkable. --- .../homo_sapiens/core/external_db.txt | 220 +++++++++--------- 1 file changed, 110 insertions(+), 110 deletions(-) diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/external_db.txt b/modules/t/test-genome-DBs/homo_sapiens/core/external_db.txt index 0191ad0fe8..e61c7839ee 100644 --- a/modules/t/test-genome-DBs/homo_sapiens/core/external_db.txt +++ b/modules/t/test-genome-DBs/homo_sapiens/core/external_db.txt @@ -1,110 +1,110 @@ -210 Anopheles_symbol 1 KNOWN 1 50 Anopheles symbol MISC \N \N \N -300 BRIGGSAE_HYBRID 1 KNOWNXREF 1 5 Briggsae Hybrid MISC \N \N \N -400 Celera_Gene 1 PRED 1 5 Celera gene MISC \N \N \N -410 Celera_Pep 1 PRED 1 5 Celera pep MISC \N \N \N -420 Celera_Trans 1 PRED 1 5 Celera trans MISC \N \N \N -600 DROS_ORTH 1 ORTH 1 5 DROS ORTH MISC \N \N \N -2 EMBL 1 KNOWNXREF 1 5 EMBL MISC \N \N \N -800 flybase_gene_id 1 KNOWNXREF 1 5 Flybase Gene MISC \N \N \N -801 flybase_translation_id 1 KNOWNXREF 1 5 Flybase translation ID MISC \N \N \N -802 flybase_gff 1 KNOWNXREF 1 5 Flybase GFF MISC \N \N \N -803 flybase_polypeptide_id 1 KNOWNXREF 1 5 Flybase Polypeptide ID MISC \N \N \N -804 flybase_annotation_id 1 KNOWNXREF 1 5 Flybase Annotation ID MISC \N \N \N -805 flybase_symbol 1 KNOWNXREF 1 50 Flybase Symbol MISC \N \N \N -806 flybase_synonym 1 KNOWNXREF 1 5 Flybase Synonym MISC \N \N \N -807 flybase_name 1 KNOWNXREF 1 5 Flybase Name MISC \N \N \N -808 flybase_transcript_id 1 KNOWNXREF 1 5 Flybase transcript ID MISC \N \N \N -810 gadfly_gene_cgid 1 KNOWNXREF 1 10 Gadfly gene CGID MISC \N \N \N -811 gadfly_transcript_cgid 1 KNOWNXREF 1 10 Gadfly transcript CGID MISC \N \N \N -812 gadfly_translation_cgid 1 KNOWNXREF 1 10 Gadfly translation CGID MISC \N \N \N -821 FlyBaseName_gene 1 KNOWNXREF 1 5 FlyBaseName gene MISC \N \N \N -824 FlyBaseName_translations 1 XREF 1 5 FlyBaseName translations MISC \N \N \N -825 FlyBaseName_transcript 1 XREF 1 50 FlyBaseName transcript MISC \N \N \N -900 GKB 1 XREF 1 5 GKB MISC \N \N \N -6 GO 1 KNOWNXREF 1 5 GO MISC \N \N \N -5 HUGO 1 KNOWNXREF 0 100 HUGO MISC \N \N \N -11 Interpro 1 XREF 1 5 Interpro MISC \N \N Test interpro desc2 -10 EntrezGene 1 KNOWNXREF 1 10 EntrezGene ARRAY \N \N \N -1400 MarkerSymbol 1 KNOWNXREF 1 50 MarkerSymbol MISC \N \N \N -4 MIM 1 KNOWNXREF 1 5 MIM MISC \N \N \N -8 PDB 1 KNOWNXREF 1 5 PDB MISC \N \N \N -3 protein_id 1 KNOWNXREF 1 5 Protein ID ALT_TRANS \N \N \N -9 RefSeq_dna 1 KNOWN 1 25 RefSeq DNA MISC \N \N \N -1805 RefSeq_dna_predicted 1 PRED 1 15 RefSeq DNA predicted MISC \N \N \N -1810 RefSeq_peptide 1 KNOWN 1 26 RefSeq peptide MISC \N \N \N -1815 RefSeq_peptide_predicted 1 PRED 1 16 RefSeq peptide predicted MISC \N \N \N -1900 Sanger_Hver1_2_1 1 XREF 1 5 Sanger Hver 121 MISC \N \N \N -1901 Sanger_Hver1_3_1 1 XREF 1 5 Sanger Hver 131 MISC \N \N \N -1902 SNGR_Hver 1 XREF 1 5 Sanger Hver MISC \N \N \N -1910 Sanger_Mver1_1_1 1 XREF 1 5 Sanger Hver 111 MISC \N \N \N -7 Uniprot/SPTREMBL 1 KNOWN 1 20 UniProt/TrEMBL MISC \N \N \N -2010 prediction_SPTREMBL 1 XREF 1 10 Prediction SpTREMBL MISC \N \N \N -2100 Superfamily 1 KNOWNXREF 1 5 Superfamily MISC \N \N \N -1 Uniprot/SWISSPROT 1 KNOWN 1 30 UniProt/Swiss-Prot MISC \N \N \N -2300 Vega_gene 1 XREF 1 5 Vega gene MISC \N \N \N -2310 Vega_transcript 1 XREF 1 5 Vega transcript MISC \N \N \N -2320 Vega_translation 1 XREF 1 5 Vega translation MISC \N \N \N -2400 wormbase_gene 1 KNOWN 1 5 Wormbase Gene MISC \N \N \N -2410 wormbase_transcript 1 KNOWN 1 5 Wormbase Transcript MISC \N \N \N -2420 wormpep_id 1 KNOWN 1 5 Wormpep ID MISC \N \N \N -2430 wormbase_pseudogene 1 PSEUDO 1 5 Wormbase Pseudogene MISC \N \N \N -2510 ZFIN_ID 1 KNOWNXREF 1 5 ZFIN ID MISC \N \N \N -2600 GeneDB 1 KNOWN 1 5 GeneDB MISC \N \N \N -2601 ciona_int_jgi_proteins_v1 1 KNOWN 1 5 Ciona V1 MISC \N \N \N -2700 Ens_Hs_gene 1 XREF 1 5 Ensembl Human Gene MISC \N \N \N -2710 Ens_Hs_transcript 1 XREF 1 5 Ensembl Human Transcript MISC \N \N \N -2720 Ens_Hs_translation 1 XREF 1 5 Ensembl Human Translation MISC \N \N \N -2800 RGD 1 XREF 1 50 RGD MISC \N \N \N -2900 Genoscope_pred_gene 1 XREF 1 38 Genoscope pred gene MISC \N \N \N -2910 Genoscope_pred_transcript 1 XREF 1 39 Genoscope pred transcript MISC \N \N \N -2920 Genoscope_annotated_gene 1 KNOWN 1 40 Genoscope annotated gene MISC \N \N \N -3001 AFFY_MG_U74_all 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N -3002 AFFY_MG_U74A 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N -3003 AFFY_MG_U74Av2 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N -3004 AFFY_MG_U74B 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N -3005 AFFY_MG_U74Bv2 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N -3006 AFFY_MG_U74C 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N -3007 AFFY_MG_U74Cv2 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N -3008 AFFY_MOE430_all 1 XREF 1 1 Affymx Microarray OE430 ARRAY \N \N \N -3009 AFFY_MOE430A 1 XREF 1 1 Affymx Microarray MOE430 ARRAY \N \N \N -3010 AFFY_MOE430B 1 XREF 1 1 Affymx Microarray MOE430 ARRAY \N \N \N -3011 AFFY_Mu11Ksub_all 1 XREF 1 1 Affymx Microarray Mu11 ARRAY \N \N \N -3012 AFFY_Mu11KsubA 1 XREF 1 1 Affymx Microarray Mu11 ARRAY \N \N \N -3013 AFFY_Mu11KsubB 1 XREF 1 1 Affymx Microarray Mu11 ARRAY \N \N \N -3014 AFFY_Mouse430_2 1 XREF 1 1 Affymx Microarray Mouse430 ARRAY \N \N \N -3015 AFFY_Mouse430A_2 1 XREF 1 1 Affymx Microarray Mouse430 ARRAY \N \N \N -3051 AFFY_RAE230_all 1 XREF 1 1 Affymx Microarray RAE230 ARRAY \N \N \N -3052 AFFY_RAE230A 1 XREF 1 1 Affymx Microarray RAE230 ARRAY \N \N \N -3053 AFFY_RAE230B 1 XREF 1 1 Affymx Microarray RAE230 ARRAY \N \N \N -3054 AFFY_RG_U34_all 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N -3055 AFFY_RG_U34A 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N -3056 AFFY_RG_U34B 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N -3057 AFFY_RG_U34C 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N -3058 AFFY_RN_U34 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N -3059 AFFY_RT_U34 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N -3101 AFFY_HG_U133_all 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N -3102 AFFY_HG_U133A 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N -3103 AFFY_HG_U133B 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N -3104 AFFY_HG_U95_all 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N -3105 AFFY_HG_U95A 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N -3106 AFFY_HG_U95Av2 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N -3107 AFFY_HG_U95B 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N -3108 AFFY_HG_U95C 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N -3109 AFFY_HG_U95D 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N -3110 AFFY_HG_U95E 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N -3111 AFFY_HG_U133_PLUS_2 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N -3112 AFFY_HG_U133A_2 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N -3113 AFFY_HG_Focus 1 XREF 1 1 Affymx Microarray Focus ARRAY \N \N \N -3114 AFFY_Rat230_2 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N -3115 AFFY_Zebrafish 1 XREF 1 1 Affymx Microarray Zebrafish ARRAY \N \N \N -3116 AFFY_U133_X3P 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N -3117 AFFY_Canine 1 XREF 1 1 Affymx Microarray Canine ARRAY \N \N \N -3118 AFFY_Chicken 1 XREF 1 1 Affymx Microarray Chicken ARRAY \N \N \N -3300 miRNA_Registry 1 XREF 1 1 miRNA Registry MISC \N \N \N -3400 SGD 1 KNOWN 1 50 SGD MISC \N \N \N -3500 IPI 1 KNOWN 1 5 IPI MISC \N \N \N -3800 CCDS 1 KNOWN 1 50 CCDS MISC \N \N \N -3900 PUBMED 1 KNOWN 1 5 Sequence Publications LIT \N \N \N -4000 MEDLINE 1 KNOWN 1 5 MEDLINE LIT \N \N \N -4100 UniGene 1 KNOWN 1 5 UniGene MISC \N \N \N -4200 RFAM 1 XREF 1 5 RFAM MISC \N \N \N +210 Anopheles_symbol 1 KNOWN 50 Anopheles symbol MISC \N \N \N +300 BRIGGSAE_HYBRID 1 KNOWNXREF 5 Briggsae Hybrid MISC \N \N \N +400 Celera_Gene 1 PRED 5 Celera gene MISC \N \N \N +410 Celera_Pep 1 PRED 5 Celera pep MISC \N \N \N +420 Celera_Trans 1 PRED 5 Celera trans MISC \N \N \N +600 DROS_ORTH 1 ORTH 5 DROS ORTH MISC \N \N \N +2 EMBL 1 KNOWNXREF 5 EMBL MISC \N \N \N +800 flybase_gene_id 1 KNOWNXREF 5 Flybase Gene MISC \N \N \N +801 flybase_translation_id 1 KNOWNXREF 5 Flybase translation ID MISC \N \N \N +802 flybase_gff 1 KNOWNXREF 5 Flybase GFF MISC \N \N \N +803 flybase_polypeptide_id 1 KNOWNXREF 5 Flybase Polypeptide ID MISC \N \N \N +804 flybase_annotation_id 1 KNOWNXREF 5 Flybase Annotation ID MISC \N \N \N +805 flybase_symbol 1 KNOWNXREF 50 Flybase Symbol MISC \N \N \N +806 flybase_synonym 1 KNOWNXREF 5 Flybase Synonym MISC \N \N \N +807 flybase_name 1 KNOWNXREF 5 Flybase Name MISC \N \N \N +808 flybase_transcript_id 1 KNOWNXREF 5 Flybase transcript ID MISC \N \N \N +810 gadfly_gene_cgid 1 KNOWNXREF 10 Gadfly gene CGID MISC \N \N \N +811 gadfly_transcript_cgid 1 KNOWNXREF 10 Gadfly transcript CGID MISC \N \N \N +812 gadfly_translation_cgid 1 KNOWNXREF 10 Gadfly translation CGID MISC \N \N \N +821 FlyBaseName_gene 1 KNOWNXREF 5 FlyBaseName gene MISC \N \N \N +824 FlyBaseName_translations 1 XREF 5 FlyBaseName translations MISC \N \N \N +825 FlyBaseName_transcript 1 XREF 50 FlyBaseName transcript MISC \N \N \N +900 GKB 1 XREF 5 GKB MISC \N \N \N +6 GO 1 KNOWNXREF 5 GO MISC \N \N \N +5 HUGO 1 KNOWNXREF 100 HUGO MISC \N \N \N +11 Interpro 1 XREF 5 Interpro MISC \N \N Test interpro desc2 +10 EntrezGene 1 KNOWNXREF 10 EntrezGene ARRAY \N \N \N +1400 MarkerSymbol 1 KNOWNXREF 50 MarkerSymbol MISC \N \N \N +4 MIM 1 KNOWNXREF 5 MIM MISC \N \N \N +8 PDB 1 KNOWNXREF 5 PDB MISC \N \N \N +3 protein_id 1 KNOWNXREF 5 Protein ID ALT_TRANS \N \N \N +9 RefSeq_dna 1 KNOWN 25 RefSeq DNA MISC \N \N \N +1805 RefSeq_dna_predicted 1 PRED 15 RefSeq DNA predicted MISC \N \N \N +1810 RefSeq_peptide 1 KNOWN 26 RefSeq peptide MISC \N \N \N +1815 RefSeq_peptide_predicted 1 PRED 16 RefSeq peptide predicted MISC \N \N \N +1900 Sanger_Hver1_2_1 1 XREF 5 Sanger Hver 121 MISC \N \N \N +1901 Sanger_Hver1_3_1 1 XREF 5 Sanger Hver 131 MISC \N \N \N +1902 SNGR_Hver 1 XREF 5 Sanger Hver MISC \N \N \N +1910 Sanger_Mver1_1_1 1 XREF 5 Sanger Hver 111 MISC \N \N \N +7 Uniprot/SPTREMBL 1 KNOWN 20 UniProt/TrEMBL MISC \N \N \N +2010 prediction_SPTREMBL 1 XREF 10 Prediction SpTREMBL MISC \N \N \N +2100 Superfamily 1 KNOWNXREF 5 Superfamily MISC \N \N \N +1 Uniprot/SWISSPROT 1 KNOWN 30 UniProt/Swiss-Prot MISC \N \N \N +2300 Vega_gene 1 XREF 5 Vega gene MISC \N \N \N +2310 Vega_transcript 1 XREF 5 Vega transcript MISC \N \N \N +2320 Vega_translation 1 XREF 5 Vega translation MISC \N \N \N +2400 wormbase_gene 1 KNOWN 5 Wormbase Gene MISC \N \N \N +2410 wormbase_transcript 1 KNOWN 5 Wormbase Transcript MISC \N \N \N +2420 wormpep_id 1 KNOWN 5 Wormpep ID MISC \N \N \N +2430 wormbase_pseudogene 1 PSEUDO 5 Wormbase Pseudogene MISC \N \N \N +2510 ZFIN_ID 1 KNOWNXREF 5 ZFIN ID MISC \N \N \N +2600 GeneDB 1 KNOWN 5 GeneDB MISC \N \N \N +2601 ciona_int_jgi_proteins_v1 1 KNOWN 5 Ciona V1 MISC \N \N \N +2700 Ens_Hs_gene 1 XREF 5 Ensembl Human Gene MISC \N \N \N +2710 Ens_Hs_transcript 1 XREF 5 Ensembl Human Transcript MISC \N \N \N +2720 Ens_Hs_translation 1 XREF 5 Ensembl Human Translation MISC \N \N \N +2800 RGD 1 XREF 50 RGD MISC \N \N \N +2900 Genoscope_pred_gene 1 XREF 38 Genoscope pred gene MISC \N \N \N +2910 Genoscope_pred_transcript 1 XREF 39 Genoscope pred transcript MISC \N \N \N +2920 Genoscope_annotated_gene 1 KNOWN 40 Genoscope annotated gene MISC \N \N \N +3001 AFFY_MG_U74_all 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N +3002 AFFY_MG_U74A 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N +3003 AFFY_MG_U74Av2 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N +3004 AFFY_MG_U74B 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N +3005 AFFY_MG_U74Bv2 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N +3006 AFFY_MG_U74C 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N +3007 AFFY_MG_U74Cv2 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N +3008 AFFY_MOE430_all 1 XREF 1 Affymx Microarray OE430 ARRAY \N \N \N +3009 AFFY_MOE430A 1 XREF 1 Affymx Microarray MOE430 ARRAY \N \N \N +3010 AFFY_MOE430B 1 XREF 1 Affymx Microarray MOE430 ARRAY \N \N \N +3011 AFFY_Mu11Ksub_all 1 XREF 1 Affymx Microarray Mu11 ARRAY \N \N \N +3012 AFFY_Mu11KsubA 1 XREF 1 Affymx Microarray Mu11 ARRAY \N \N \N +3013 AFFY_Mu11KsubB 1 XREF 1 Affymx Microarray Mu11 ARRAY \N \N \N +3014 AFFY_Mouse430_2 1 XREF 1 Affymx Microarray Mouse430 ARRAY \N \N \N +3015 AFFY_Mouse430A_2 1 XREF 1 Affymx Microarray Mouse430 ARRAY \N \N \N +3051 AFFY_RAE230_all 1 XREF 1 Affymx Microarray RAE230 ARRAY \N \N \N +3052 AFFY_RAE230A 1 XREF 1 Affymx Microarray RAE230 ARRAY \N \N \N +3053 AFFY_RAE230B 1 XREF 1 Affymx Microarray RAE230 ARRAY \N \N \N +3054 AFFY_RG_U34_all 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N +3055 AFFY_RG_U34A 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N +3056 AFFY_RG_U34B 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N +3057 AFFY_RG_U34C 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N +3058 AFFY_RN_U34 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N +3059 AFFY_RT_U34 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N +3101 AFFY_HG_U133_all 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N +3102 AFFY_HG_U133A 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N +3103 AFFY_HG_U133B 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N +3104 AFFY_HG_U95_all 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N +3105 AFFY_HG_U95A 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N +3106 AFFY_HG_U95Av2 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N +3107 AFFY_HG_U95B 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N +3108 AFFY_HG_U95C 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N +3109 AFFY_HG_U95D 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N +3110 AFFY_HG_U95E 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N +3111 AFFY_HG_U133_PLUS_2 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N +3112 AFFY_HG_U133A_2 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N +3113 AFFY_HG_Focus 1 XREF 1 Affymx Microarray Focus ARRAY \N \N \N +3114 AFFY_Rat230_2 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N +3115 AFFY_Zebrafish 1 XREF 1 Affymx Microarray Zebrafish ARRAY \N \N \N +3116 AFFY_U133_X3P 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N +3117 AFFY_Canine 1 XREF 1 Affymx Microarray Canine ARRAY \N \N \N +3118 AFFY_Chicken 1 XREF 1 Affymx Microarray Chicken ARRAY \N \N \N +3300 miRNA_Registry 1 XREF 1 miRNA Registry MISC \N \N \N +3400 SGD 1 KNOWN 50 SGD MISC \N \N \N +3500 IPI 1 KNOWN 5 IPI MISC \N \N \N +3800 CCDS 1 KNOWN 50 CCDS MISC \N \N \N +3900 PUBMED 1 KNOWN 5 Sequence Publications LIT \N \N \N +4000 MEDLINE 1 KNOWN 5 MEDLINE LIT \N \N \N +4100 UniGene 1 KNOWN 5 UniGene MISC \N \N \N +4200 RFAM 1 XREF 5 RFAM MISC \N \N \N -- GitLab