From 25edd30ba68ffc6a063510735b2ed84a07d9bfb3 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Tue, 4 Sep 2012 10:51:54 +0000
Subject: [PATCH] memory requirements adjusted in regard to latest pipeline
runs
---
.../Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm
index cc636a78ec..f3c566bb0a 100644
--- a/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm
+++ b/modules/Bio/EnsEMBL/Pipeline/PipeConfig/Core_handover_conf.pm
@@ -92,7 +92,7 @@ sub pipeline_analyses {
},
-max_retry_count => 3,
-hive_capacity => 100,
- -rc_name => 'normal',
+ -rc_name => 'mem',
},
{
@@ -235,8 +235,8 @@ sub resource_classes {
my $self = shift;
return {
'default' => { 'LSF' => ''},
- 'normal' => { 'LSF' => '-q normal -M 1000000 -R"select[mem>1000 && myens_stag1tok>800 && myens_stag2tok>800] rusage[mem=1000:myens_stag1tok=10:myens_stag2tok=10:duration=10]"'},
- 'mem' => { 'LSF' => '-q normal -M 2500000 -R"select[mem>2500 && myens_stag1tok>800 && myens_stag2tok>800] rusage[mem=2500:myens_stag1tok=10:myens_stag2tok=10:duration=10]"'},
+ 'normal' => { 'LSF' => '-q normal -M 500000 -R"select[mem>500 && myens_stag1tok>800 && myens_stag2tok>800] rusage[mem=500:myens_stag1tok=10:myens_stag2tok=10:duration=10]"'},
+ 'mem' => { 'LSF' => '-q normal -M 1500000 -R"select[mem>1500 && myens_stag1tok>800 && myens_stag2tok>800] rusage[mem=1500:myens_stag1tok=10:myens_stag2tok=10:duration=10]"'},
}
}
--
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