From 295dbab2caed39ab3d2f0f3a100dacdea8dec665 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Mon, 13 Nov 2006 13:04:07 +0000
Subject: [PATCH] Add blank factor so that features are displayed properly.
---
.../RegulatoryFeatureParser/enhancer.pm | 9 +++++++++
1 file changed, 9 insertions(+)
diff --git a/misc-scripts/regulatory_regions/RegulatoryFeatureParser/enhancer.pm b/misc-scripts/regulatory_regions/RegulatoryFeatureParser/enhancer.pm
index 2b33cef157..488be31bc0 100644
--- a/misc-scripts/regulatory_regions/RegulatoryFeatureParser/enhancer.pm
+++ b/misc-scripts/regulatory_regions/RegulatoryFeatureParser/enhancer.pm
@@ -60,6 +60,10 @@ sub parse {
exit(1);
}
+
+ # link to a blank factor so the SQL still works
+ my $blank_factor_id = $self->get_blank_factor_id($db_adaptor);
+
# read file
open (FILE, "<$file") || die "Can't open $file";
@@ -149,6 +153,11 @@ sub parse {
$feature{EVIDENCE} = "";
+ # ----------------------------------------
+ # Factor - blank so that the SQL for retrieving still works
+
+ $feature{FACTOR_ID} = $blank_factor_id;
+
# ----------------------------------------
# Add to object to be returned
--
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