diff --git a/misc-scripts/ontology/scripts/load_OBO_file.pl b/misc-scripts/ontology/scripts/load_OBO_file.pl index 1ea10e04f7d38ecc9cb628b05884c2711d124ba1..2d27d283e6dde4e4a2d0cdfa9f1422364324b38b 100755 --- a/misc-scripts/ontology/scripts/load_OBO_file.pl +++ b/misc-scripts/ontology/scripts/load_OBO_file.pl @@ -488,7 +488,7 @@ if ($delete_unknown) { #if parsing an EFO obo file delete xref lines - not compatible with OBO:Parser #requires correct default-namespace defined my $efo_default_namespace; -my @returncode = `grep "default-namespace: efo" $obo_file_name`; +my @returncode = `grep -i "default-namespace: efo" $obo_file_name`; @returncode = `grep 'property_value: "hasDefaultNamespace" "EFO"' $obo_file_name` if scalar(@returncode) == 0; my $returncode = @returncode; if ($returncode > 0) {