From 2a7421cf748cedf402b03678ae4ae8d7e6e98e46 Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Wed, 14 Nov 2012 12:01:45 +0000
Subject: [PATCH] Make the efo search case-insensitive
---
misc-scripts/ontology/scripts/load_OBO_file.pl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/misc-scripts/ontology/scripts/load_OBO_file.pl b/misc-scripts/ontology/scripts/load_OBO_file.pl
index 1ea10e04f7..2d27d283e6 100755
--- a/misc-scripts/ontology/scripts/load_OBO_file.pl
+++ b/misc-scripts/ontology/scripts/load_OBO_file.pl
@@ -488,7 +488,7 @@ if ($delete_unknown) {
#if parsing an EFO obo file delete xref lines - not compatible with OBO:Parser
#requires correct default-namespace defined
my $efo_default_namespace;
-my @returncode = `grep "default-namespace: efo" $obo_file_name`;
+my @returncode = `grep -i "default-namespace: efo" $obo_file_name`;
@returncode = `grep 'property_value: "hasDefaultNamespace" "EFO"' $obo_file_name` if scalar(@returncode) == 0;
my $returncode = @returncode;
if ($returncode > 0) {
--
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