From 2cedd12036aeb84799ecbcc0b3f79abbbe181156 Mon Sep 17 00:00:00 2001 From: Magali Ruffier <mr6@ebi.ac.uk> Date: Wed, 8 Feb 2017 16:55:02 +0000 Subject: [PATCH] new EBI server settings --- misc-scripts/xref_mapping/xref_config.ini | 30 +++++++++++------------ 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index 95997b7d40..ab882e9925 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -784,7 +784,7 @@ priority = 1 prio_descr = parser = CCDSParser release_uri = -data_uri = script:host=>ens-livemirror,dbname=>ccds_human_85,tran_name=>ENST, +data_uri = script:host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_human_88,port=>4531,tran_name=>ENST, [source CCDS::mus_musculus] # Used by mus_musculus @@ -795,7 +795,7 @@ priority = 1 prio_descr = parser = CCDSParser release_uri = -data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse_85,tran_name=>ENSMUST, +data_uri = script:host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_mouse_88,port=>4531,tran_name=>ENSMUST, [source Celera_Pep::anopheles_gambiae] # Used by anopheles_gambiae @@ -1126,7 +1126,7 @@ priority = 2 prio_descr = ccds parser = HGNC_CCDSParser release_uri = -data_uri = script:wget=>http://www.genenames.org/cgi-bin/download?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,host=>ens-livemirror,dbname=>ccds_human_85, +data_uri = script:wget=>http://www.genenames.org/cgi-bin/download?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_human_88,port=>4531,tran_name=>ENST, [source HGNC::homo_sapiens#07] @@ -1149,7 +1149,7 @@ priority = 3 prio_descr = vega parser = VegaOfficialNameParser release_uri = -data_uri = script:source=>HGNC,host=>ens-staging1, +data_uri = script:source=>HGNC,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>HGNC,chost=>ens-production,cdbname=>mr6_human_core,vdbhost=>ens-production,vdbname=>mr6_human_vega, @@ -1419,7 +1419,7 @@ priority = 2 prio_descr = vega parser = VegaOfficialNameParser release_uri = -data_uri = script:source=>MGI,host=>ens-staging2, +data_uri = script:source=>MGI,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>MGI,chost=>ens-production,cdbname=>mr6_mouse_core,vhost=>ens-production,vdbname=>mr6_mouse_vega, [source MGI::mus_musculus#05] @@ -1558,7 +1558,7 @@ priority = 3 prio_descr = vega parser = VegaOfficialNameParser release_uri = -data_uri = script:source=>RGD,host=>ens-staging2, +data_uri = script:source=>RGD,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>RGD,chost=>genebuild3,cdbname=>db8_rattus_norvegicus_core_77_5,vhost=>genebuild6,vdbname=>db8_rat_vega_77, [source RGD_trans_name] @@ -1578,7 +1578,7 @@ priority = 1 prio_descr = parser = curated_transcriptParser release_uri = -data_uri = script:source=>RGD,host=>ens-staging2, +data_uri = script:source=>RGD,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>RGD,chost=>ens-staging2,cdbname=>rattus_norvegicus_core_77_5,vdbname=>db8_rat_vega_77,vhost=>genebuild6, [source RefSeq_dna::MULTI-fungi] @@ -2234,7 +2234,7 @@ priority = 2 prio_descr = ccds parser = RefSeq_CCDSParser release_uri = -data_uri = script:host=>ens-livemirror,dbname=>ccds_human_85, +data_uri = script:host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_human_88,port=>4531,tran_name=>ENST, [source RefSeq_dna::homo_sapiens#01] # Used by homo_sapiens @@ -2280,7 +2280,7 @@ priority = 2 prio_descr = ccds parser = RefSeq_CCDSParser release_uri = -data_uri = script:host=>ens-livemirror,dbname=>ccds_mouse_85, +data_uri = script:host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_mouse_88,port=>4531,tran_name=>ENSMUST, [source RefSeq_dna::pan_troglodytes] @@ -3941,7 +3941,7 @@ priority = 1 prio_descr = curated with transcript number postfix parser = curated_transcriptParser release_uri = -data_uri = script:source=>HGNC,host=>ens-staging1, +data_uri = script:source=>HGNC,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>HGNC,chost=>ens-production,cdbname=>mr6_human_core,vdbname=>mr6_human_vega,vhost=>ens-production, [source PIGGY_curated_transcript::sus_scrofa] @@ -3952,7 +3952,7 @@ priority = 1 prio_descr = curated with transcript number postfix parser = curated_transcriptParser release_uri = -data_uri = script:source=>PIGGY,host=>ens-staging2, +data_uri = script:source=>PIGGY,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>PIGGY,chost=>ens-production,cdbname=>mr6_pig_core,vdbname=>mr6_pig_vega,vhost=>ens-production, [source PIGGY::sus_scrofa] @@ -3964,7 +3964,7 @@ priority = 1 prio_descr = vega parser = VegaOfficialNameParser release_uri = -data_uri = script:host=>ens-staging2,source=>PIGGY, +data_uri = script:host=>mysql-ens-sta-1,port=>4519, [source PIGGY_trans_name] name = PIGGY_trans_name @@ -4019,7 +4019,7 @@ priority = 1 prio_descr = parser = curated_transcriptParser release_uri = -data_uri = script:source=>MGI,host=>ens-staging2, +data_uri = script:source=>MGI,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>MGI,chost=>ens-production,cdbname=>mr6_mouse_core,vdbname=>mr6_pig_vega,vhost=>ens-production, @@ -4127,7 +4127,7 @@ priority = 2 prio_descr = vega parser = VegaOfficialNameParser release_uri = -data_uri = script:source=>ZFIN_ID,host=>ens-staging1, +data_uri = script:source=>ZFIN_ID,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>ZFIN_ID,chost=>ens-production,cdbname=>mr6_danio_core,vhost=>ens-production,vdbname=>mr6_danio_vega, [source ZFIN_ID::danio_rerio#03] @@ -4150,7 +4150,7 @@ priority = 1 prio_descr = curated with transcript number postfix parser = curated_transcriptParser release_uri = -data_uri = script:source=>ZFIN_ID,host=>ens-staging1, +data_uri = script:source=>ZFIN_ID,host=>mysql-ens-sta-1,port=>4519, #data_uri = script:source=>ZFIN_ID,chost=>ens-production,cdbname=>mr6_danio_core,vdbname=>mr6_pig_vega,vhost=>ens-production, [source ZFIN_ID_trans_name] -- GitLab