diff --git a/misc-scripts/density_feature/seq_region_stats.pl b/misc-scripts/density_feature/seq_region_stats.pl index 8656152dfb794295968ece05e6fa4b8d2e2c03b1..195f1fffe15f7bd0ff41e2e5bd37c8e67a2af7c4 100644 --- a/misc-scripts/density_feature/seq_region_stats.pl +++ b/misc-scripts/density_feature/seq_region_stats.pl @@ -1,5 +1,6 @@ use strict; +use Bio::EnsEMBL::Registry; use Bio::EnsEMBL::DBSQL::DBAdaptor; use Bio::EnsEMBL::Variation::DBSQL::DBAdaptor; use Getopt::Long; @@ -22,11 +23,12 @@ my $db = new Bio::EnsEMBL::DBSQL::DBAdaptor(-host => $host, -dbname => $dbname); -my %attrib_codes = ( 'miRNA' => 'miRNA', +my %attrib_codes = ( 'miRNA' => 'miRNA', 'snRNA' => 'snRNA', 'snoRNA' => 'snoRNA', 'rRNA' => 'rRNA', 'tRNA' => 'tRNA', + 'snlRNA' => 'snlRNA', 'known protein_coding' => 'knwCod', 'misc_RNA' => 'mscRNA', 'novel protein_coding' => 'novCod',