From 2fe5f4fdb21c9dd0c0c46e02bb5f1bb3fa7a685d Mon Sep 17 00:00:00 2001 From: Arnaud Kerhornou <arnaud@ebi.ac.uk> Date: Fri, 5 Oct 2012 14:34:43 +0000 Subject: [PATCH] new (resurrected source ncRNA_EG::EG, which replaces RNAMMER, TRNASCAN and RFAM::EG sources); passes as an argument the logic_name instead of a biotype --- misc-scripts/xref_mapping/xref_config.ini | 21 +++++++++++++++++---- 1 file changed, 17 insertions(+), 4 deletions(-) diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index 754b5ea0ba..4f2e355fcc 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -3319,6 +3319,18 @@ parser = CoreXrefParser release_uri = data_uri = script:biotype=>tRNA,object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, +[source ncRNA_EG::EG] +# Used by EnsemblGenomes, e.g. aspergillus_clavatus, aspergillus_flavus, aspergillus_fumigatus, aspergillus_nidulans, aspergillus_niger, aspergillus_oryzae, aspergillus_terreus, neosartorya_fischeri +# replaces TRNASCAN; RNAMMER and RFAM::EG +name = ncRNA_EG +download = Y +order = 70 +priority = 1 +prio_descr = +parser = CoreXrefParser +release_uri = +data_uri = script:logic_name=>ncrna_eg,object_type=>gene,project=>ensemblgenomes,copy_description_from_object=>1, + [source misc_EG::EG] # Used by EnsemblGenomes to maintain sources of xrefs which don't have a proper parser yet. name = misc_EG @@ -6154,10 +6166,11 @@ source = RefSeq_dna::MULTI-Plants source = RefSeq_peptide::MULTI-Plants source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -source = RFAM::EG -source = miRBase::MULTI -source = RNAMMER::MULTI -source = TRNASCAN_SE::MULTI +#source = RFAM::EG +#source = miRBase::MULTI +#source = RNAMMER::MULTI +#source = TRNASCAN_SE::MULTI +source = ncRNA_EG::EG source = goslim_goa::EG source = ArrayExpress::EG source = PGSC_GENE::solanum_tuberosum -- GitLab