From 3245c16b397d2be1f05d8cf4d7c9bec1882a8ce1 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Wed, 10 Jan 2018 10:06:58 +0000
Subject: [PATCH] use correct variables
---
misc-scripts/xref_mapping/XrefParser/BaseParser.pm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/BaseParser.pm b/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
index 222268b59b..56083c5473 100644
--- a/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/BaseParser.pm
@@ -510,7 +510,7 @@ sub upload_xref_object_graphs {
$direct_xref->{LINKAGE_TYPE});
$xref_id_sth->execute(
$xref->{ACCESSION},
- $xref->{SOURCE_ID},
+ $direct_xref->{SOURCE_ID},
$xref->{SPECIES_ID} );
$direct_xref_id = ($xref_id_sth->fetchrow_array())[0];
$self->add_direct_xref($direct_xref_id, $direct_xref->{STABLE_ID}, $direct_xref->{ENSEMBL_TYPE},$direct_xref->{LINKAGE_TYPE}, $dbi);
@@ -576,8 +576,8 @@ sub upload_xref_object_graphs {
# find the xref_id for dependent xref
#####################################
$xref_id_sth->execute(
- $xref->{ACCESSION},
- $xref->{SOURCE_ID},
+ $dep{ACCESSION},
+ $dep{SOURCE_ID},
$xref->{SPECIES_ID} );
my $dep_xref_id = ($xref_id_sth->fetchrow_array())[0];
--
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