From 32f91221d3fd0d8694a24efd39c1d784f6386347 Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Mon, 3 Sep 2012 16:27:47 +0000
Subject: [PATCH] Adding patch from James Allen where a copy/paste bug has
meant the incorrect setting of end_Exon to be on the $translation and not
alternative $translation
---
modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
index c67dcf6534..d442a8b8f6 100644
--- a/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm
@@ -981,12 +981,13 @@ sub store {
. "to be one of the exon in"
. "its associated Transcript" );
}
- } elsif ( !defined( $end_exon->dbID() ) ) {
+ }
+ if ( !defined( $end_exon->dbID() ) ) {
my $key = $end_exon->hashkey();
($end_exon) = grep { $_->hashkey() eq $key } @$exons;
if ( defined($end_exon) ) {
- $translation->end_Exon($end_exon);
+ $alt_translation->end_Exon($end_exon);
} else {
throw( "Translation's end_Exon does not appear "
. "to be one of the exons in "
--
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