diff --git a/misc-scripts/external_db/external_dbs.txt b/misc-scripts/external_db/external_dbs.txt index 66c03b96e236029abc943dddba2cdcc569219a59..764503df4206fd8e4e3e1fbf4dd4eab08b2cdc65 100644 --- a/misc-scripts/external_db/external_dbs.txt +++ b/misc-scripts/external_db/external_dbs.txt @@ -29,18 +29,18 @@ 826 FlyBaseCGID_gene 1 XREF 1 0 5 FlyBaseCGID gene MISC \N \N 827 FlyBaseCGID_transcript 1 XREF 1 0 50 FlyBaseCGID transcript MISC \N \N 828 FlyBaseCGID_translation 1 XREF 1 0 50 FlyBaseCGID translation MISC \N \N -830 DGRC-1 1 KNOWNXREF 1 0 5 Drosophila Genomics Resource Center 1 MISC \N \N -831 DGRC-2 1 KNOWNXREF 1 0 5 Drosophila Genomics Resource Center 2 MISC \N \N -840 DRSC 1 KNOWNXREF 1 0 5 Drosophila RNAi Screening Center MISC \N \N -850 FlyReg 1 KNOWNXREF 1 0 5 FlyReg, Drosophila DNase I Footprint Database MISC \N \N -860 GenomeRNAi 1 KNOWNXREF 1 0 5 GenomeRNAi is a database of phenotypes from systematic RNA interference (RNAi) screens in cultured Drosophila cells MISC \N \N -870 MitoDrome 1 KNOWNXREF 1 0 5 MitoDrome, a database of Drosophila melanogaster nuclear genes encoding for mitochondrial proteins MISC \N \N -880 BDGP_insitu_expr 1 KNOWNXREF 1 0 5 Berkeley Drosophila Genome Project in situ Gene Expression Database (embryogenesis) MISC \N \N -881 DrosDel 1 KNOWNXREF 1 0 5 An isogenic deficiency kit for Drosophila melanogaster MISC \N \N -882 FlyGrid 1 KNOWNXREF 1 0 5 Fly GRID Interaction Data, The General Repository for Interaction Datasets MISC \N \N -883 hybrigenics 1 KNOWNXREF 1 0 5 Hybrigenics Drosophila PIMRider (protein interaction map) -884 InteractiveFly 1 KNOWNXREF 1 0 5 Interactive Fly, A cyberspace guide to Drosophila genes and their roles in development MISC \N \N -890 DEDb 1 KNOWNXREF 1 0 5 Drosophila melanogaster Exon DataBase MISC \N \N +830 DGRC-1 1 KNOWNXREF 1 0 5 Drosophila Genomics Resource Center 1 MISC \N \N +831 DGRC-2 1 KNOWNXREF 1 0 5 Drosophila Genomics Resource Center 2 MISC \N \N +840 DRSC 1 KNOWNXREF 1 0 5 Drosophila RNAi Screening Center MISC \N \N +850 FlyReg 1 KNOWNXREF 1 0 5 FlyReg, Drosophila DNase I Footprint Database MISC \N \N +860 GenomeRNAi 1 KNOWNXREF 1 0 5 GenomeRNAi is a database of phenotypes from systematic RNA interference (RNAi) screens in cultured Drosophila cells MISC \N \N +870 MitoDrome 1 KNOWNXREF 1 0 5 MitoDrome, a database of Drosophila melanogaster nuclear genes encoding for mitochondrial proteins MISC \N \N +880 BDGP_insitu_expr 1 KNOWNXREF 1 0 5 Berkeley Drosophila Genome Project in situ Gene Expression Database (embryogenesis) MISC \N \N +881 DrosDel 1 KNOWNXREF 1 0 5 An isogenic deficiency kit for Drosophila melanogaster MISC \N \N +882 FlyGrid 1 KNOWNXREF 1 0 5 FlyGRID Interaction Data, The General Repository for Interaction Datasets MISC \N \N +883 hybrigenics 1 KNOWNXREF 1 0 5 Hybrigenics Drosophila PIMRider (protein interaction map) +884 InteractiveFly 1 KNOWNXREF 1 0 5 Interactive Fly, A cyberspace guide to Drosophila genes and their roles in development MISC \N \N +890 DEDb 1 KNOWNXREF 1 0 5 Drosophila melanogaster Exon DataBase MISC \N \N 900 GKB 1 XREF 1 0 5 GKB MISC \N \N 1000 GO 1 KNOWNXREF 1 0 5 GO MISC \N \N 1100 HGNC 1 KNOWNXREF 0 1 100 HGNC Symbol PRIMARY_DB_SYNONYM \N \N @@ -201,7 +201,7 @@ 5700 Ens_Cf_gene 1 XREF 1 0 5 Ensembl Dog Gene MISC \N \N 5710 Ens_Cf_transcript 1 XREF 1 0 5 Ensembl Dog Transcript MISC \N \N 5720 Ens_Cf_translation 1 XREF 1 0 5 Ensembl Dog Translation MISC \N \N -5800 Ens_Dr_gene 1 XREF 1 0 5 Ensembl Zebrafish Gene MISC \N \N +5800 Ens_Dr_gene 1 XREF 1 0 5 Ensembl Zebrafish Gene MISC \N \N 5810 Ens_Dr_transcript 1 XREF 1 0 5 Ensembl Zebrafish Transcript MISC \N \N 5820 Ens_Dr_translation 1 XREF 1 0 5 Ensembl Zebrafish Translation MISC \N \N 5900 Ens_Md_gene 1 XREF 1 0 5 Ensembl Monodelphis Gene MISC \N \N @@ -213,14 +213,14 @@ 6410 Ens_Gg_transcript 1 XREF 1 0 40 Ensembl Chicken Transcript MISC \N \N 6420 Ens_Gg_translation 1 XREF 1 0 40 Ensembl Chicken Translation MISC \N \N 6500 IMCB_Tr_gene 1 XREF 1 0 40 IMCB Fugu Gene MISC \N \N -6600 Ens_Ag_gene 1 XREF 1 0 5 Ensembl Mosquito Gene MISC \N \N -6630 Ens_Am_gene 1 XREF 1 0 5 Ensembl Bee Gene MISC \N \N -6660 Ens_Ce_gene 1 XREF 1 0 5 Ensembl Worm Gene MISC \N \N -6690 Ens_Dm_gene 1 XREF 1 0 5 Ensembl FruitFly Gene MISC \N \N -6720 Ens_Fr_gene 1 XREF 1 0 5 Ensembl Fugu Gene MISC \N \N -6750 Ens_Pt_gene 1 XREF 1 0 5 Ensembl Chimpanzee Gene MISC \N \N -6780 Ens_Rn_gene 1 XREF 1 0 5 Ensembl Rat Gene MISC \N \N -6810 Ens_Tn_gene 1 XREF 1 0 5 Ensembl PufferFish Gene MISC \N \N +6600 Ens_Ag_gene 1 XREF 1 0 5 Ensembl Mosquito Gene MISC \N \N +6630 Ens_Am_gene 1 XREF 1 0 5 Ensembl Bee Gene MISC \N \N +6660 Ens_Ce_gene 1 XREF 1 0 5 Ensembl Worm Gene MISC \N \N +6690 Ens_Dm_gene 1 XREF 1 0 5 Ensembl FruitFly Gene MISC \N \N +6720 Ens_Fr_gene 1 XREF 1 0 5 Ensembl Fugu Gene MISC \N \N +6750 Ens_Pt_gene 1 XREF 1 0 5 Ensembl Chimpanzee Gene MISC \N \N +6780 Ens_Rn_gene 1 XREF 1 0 5 Ensembl Rat Gene MISC \N \N +6810 Ens_Tn_gene 1 XREF 1 0 5 Ensembl PufferFish Gene MISC \N \N 7159 AedesGenBank 1 PRED 1 0 30 Aedes GenBank MISC \N \N 7200 IMGT/LIGM_DB 200641-6 XREF 1 1 10 IMGT/LIGM-DB MISC \N \N 7201 IMGT/GENE_DB 200641-6 KNOWN 1 0 40 IMGT/GENE-DB MISC \N \N @@ -252,15 +252,15 @@ 9800 kyotograil_2004 1 PRED 1 0 30 Ciona intestinalis Kyotograil 2004 predictions MISC \N \N 9900 kyotograil_2005 1 PRED 1 0 30 Ciona intestinalis Kyotograil 2005 predictions MISC \N \N 10000 wormbase_id 1 XREF 1 0 30 Generic exdb for worbase id of any type for feature table MISC \N \N -10100 EPD 1 KNOWNXREF 1 0 5 Eukaryotic Promoter Database (Bucher) MISC \N \N -10200 GPCR 1 KNOWNXREF 1 0 5 The G protein-coupled receptor database MISC \N \N -10300 MEROPS 1 KNOWNXREF 1 0 5 MEROPS - the Peptidase Database MISC \N \N -10400 miRBase 1 KNOWNXREF 1 0 5 microRNA database MISC \N \N -10500 TransFac 1 KNOWNXREF 1 0 5 TransFac, database of transcription factors and their binding sites MISC \N \N -10600 modCB 1 KNOWNXREF 1 0 5 Caenorhabditis briggsae, InParanoid model organism database MISC \N \N -10700 modCE 1 KNOWNXREF 1 0 5 Caenorhabditis elegans, InParanoid model organism database MISC \N \N -10800 modDD 1 KNOWNXREF 1 0 5 Dictyostelium discoideum, InParanoid model organism database MISC \N \N -10900 GI 1 XREF 1 0 5 GenInfo Identifier, a sequence identification number for a nucleotide sequence MISC \N \N +10100 EPD 1 KNOWNXREF 1 0 5 Eukaryotic Promoter Database (Bucher) MISC \N \N +10200 GPCR 1 KNOWNXREF 1 0 5 The G protein-coupled receptor database MISC \N \N +10300 MEROPS 1 KNOWNXREF 1 0 5 MEROPS - the Peptidase Database MISC \N \N +10400 miRBase 1 KNOWNXREF 1 0 5 microRNA database MISC \N \N +10500 TransFac 1 KNOWNXREF 1 0 5 TransFac, database of transcription factors and their binding sites MISC \N \N +10600 modCB_gene 1 KNOWNXREF 1 0 5 Caenorhabditis briggsae, InParanoid model organism database MISC \N \N +10700 modCE_gene 1 KNOWNXREF 1 0 5 Caenorhabditis elegans, InParanoid model organism database MISC \N \N +10800 modDD_gene 1 KNOWNXREF 1 0 5 Dictyostelium discoideum, InParanoid model organism database MISC \N \N +10900 GI 1 XREF 1 0 5 GenInfo Identifier, a sequence identification number for a nucleotide sequence MISC \N \N # # # Please separate fields in this file with TABS not spaces!