From 333eb12615f8084a659b8e4d08aa57edf112cbc2 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Wed, 5 Apr 2006 15:55:08 +0000
Subject: [PATCH] added Uniprot/Varsplic to the list of those to get
descriptions from. Insert after uniprot but before refseq
---
misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm | 2 ++
misc-scripts/xref_mapping/XrefMapper/mus_musculus.pm | 2 +-
2 files changed, 3 insertions(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
index 015f2ad742..89b8f1924d 100644
--- a/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/BasicMapper.pm
@@ -2188,6 +2188,7 @@ sub transcript_display_xref_sources {
'Genoscope_predicted_transcript',
'Genoscope_predicted_gene',
'Uniprot/SWISSPROT',
+ 'Uniprot/Varsplic',
'RefSeq_peptide',
'RefSeq_dna',
'Uniprot/SPTREMBL',
@@ -2896,6 +2897,7 @@ sub gene_description_sources {
return ("RefSeq_dna_predicted",
"RefSeq_peptide_predicted",
"Uniprot/SPTREMBL",
+ "Uniprot/Varsplic",
"RefSeq_dna",
"RefSeq_peptide",
"Uniprot/SWISSPROT",
diff --git a/misc-scripts/xref_mapping/XrefMapper/mus_musculus.pm b/misc-scripts/xref_mapping/XrefMapper/mus_musculus.pm
index d5cc373c87..b27afceec8 100644
--- a/misc-scripts/xref_mapping/XrefMapper/mus_musculus.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/mus_musculus.pm
@@ -21,7 +21,7 @@ sub consortium {
sub gene_description_sources {
- return ("RefSeq_dna_predicted", "RefSeq_peptide_predicted", "Uniprot/SPTREMBL", "RefSeq_dna", "RefSeq_peptide", "Uniprot/SWISSPROT", "MarkerSymbol", "RFAM", "miRNA_Registry");
+ return ("RefSeq_dna_predicted", "RefSeq_peptide_predicted", "Uniprot/SPTREMBL", "RefSeq_dna", "RefSeq_peptide", "Uniprot/Varsplic", "Uniprot/SWISSPROT", "MarkerSymbol", "RFAM", "miRNA_Registry");
}
--
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