diff --git a/modules/Bio/EnsEMBL/IdMapping/Cache.pm b/modules/Bio/EnsEMBL/IdMapping/Cache.pm index 317fdfe39f38df0dd59b018b06b1ced403d8b016..8d298aeff5e5e7d67f9c9df9d7086c9e72010346 100644 --- a/modules/Bio/EnsEMBL/IdMapping/Cache.pm +++ b/modules/Bio/EnsEMBL/IdMapping/Cache.pm @@ -129,6 +129,9 @@ sub build_cache_by_slice { my $dbtype = shift; my $slice_name = shift; + # set cache method (required for loading cache later) + $self->cache_method('BY_SEQ_REGION'); + my $dba = $self->get_DBAdaptor($dbtype); my $sa = $dba->get_SliceAdaptor; @@ -160,9 +163,6 @@ sub build_cache_by_slice { # write cache to file, then flush cache to reclaim memory my $size = $self->write_all_to_file($type); - # set cache method (required for loading cache later) - $self->cache_method('BY_SEQ_REGION'); - return $num_genes, $size; } @@ -190,6 +190,9 @@ sub build_cache_all { my $self = shift; my $dbtype = shift; + # set cache method (required for loading cache later) + $self->cache_method('ALL'); + my $dba = $self->get_DBAdaptor($dbtype); my $ga = $dba->get_GeneAdaptor; @@ -207,9 +210,6 @@ sub build_cache_all { # write cache to file, then flush cache to reclaim memory my $size = $self->write_all_to_file($type); - # set cache method (required for loading cache later) - $self->cache_method('ALL'); - return $num_genes, $size; }