Commit 36bf079c authored by Jan-hinnerk Vogel's avatar Jan-hinnerk Vogel
Browse files

horse added

parent d3f2b9a2
......@@ -347,7 +347,7 @@ data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/
#data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-all-*.gff.gz
[source EntrezGene::MULTI]
# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
name = EntrezGene
download = Y
order = 10
......@@ -503,7 +503,7 @@ data_uri = ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/
[source GO::MULTI]
# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, canis_familiaris, ciona_intestinalis, ciona_savignyi, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, loxodonta_africana, macaca_mulatta, monodelphis_domestica, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri
# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, canis_familiaris, ciona_intestinalis, ciona_savignyi, dasypus_novemcinctus, drosophila_melanogaster, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, loxodonta_africana, macaca_mulatta, monodelphis_domestica, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri
name = GO
download = Y
order = 80
......@@ -793,7 +793,7 @@ release_uri =
data_uri = file:Illumina_V2/Human-6_v2_sequence.csv
[source Interpro::MULTI]
# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, pan_troglodytes, oryzias_latipes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, pan_troglodytes, oryzias_latipes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
name = Interpro
download = Y
order = 70
......@@ -966,7 +966,19 @@ priority = 2
prio_descr = refseq
parser = RefSeqParser
release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt
data_uri = ftp://ftp.ncbi.nih.gov/refseq/D_rerio/mRNA_Prot/zebrafish.rna.fna.gz
data_uri = ftp://ftp.ncbi.nih.gov/refseq/D_rerio/mRNA_Prot/zebrafish.rna.fna.gz
[source RefSeq_dna::equus_caballus]
# Used by equus_caballus
name = RefSeq_dna
download = Y
order = 20
priority = 2
prio_descr = refseq
parser = RefSeqParser
release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt
data_uri = ftp://ftp.ncbi.nih.gov/genomes/Equus_caballus/RNA/rna.gbk.gz
[source RefSeq_dna::gallus_gallus]
# Used by gallus_gallus
......@@ -1141,7 +1153,18 @@ priority = 1
prio_descr =
parser = RefSeqGPFFParser
release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt
data_uri = ftp://ftp.ncbi.nih.gov/refseq/D_rerio/mRNA_Prot/zebrafish.protein.gpff.gz
data_uri = ftp://ftp.ncbi.nih.gov/refseq/D_rerio/mRNA_Prot/zebrafish.protein.gpff.gz
[source RefSeq_peptide::equus_caballus]
# Used by equus_caballus
name = RefSeq_peptide
download = Y
order = 20
priority = 1
prio_descr =
parser = RefSeqGPFFParser
release_uri = ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt
data_uri = ftp://ftp.ncbi.nih.gov/genomes/Equus_caballus/protein/protein.gbk.gz
[source RefSeq_peptide::gallus_gallus]
# Used by gallus_gallus
......@@ -1358,7 +1381,19 @@ prio_descr =
parser = UniGeneParser
release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Danio_rerio/Dr.seq.uniq.gz
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Danio_rerio/Dr.data.gz
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Danio_rerio/Dr.data.gz
[source UniGene::equus_caballus]
# Used by equus_caballus
name = UniGene
download = Y
order = 30
priority = 1
prio_descr =
parser = UniGeneParser
release_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/*.LOG
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Equus_caballus/Eca.seq.uniq.gz
data_uri = ftp://ftp.ncbi.nih.gov/repository/UniGene/Equus_caballus/Eca.data.gz
[source UniGene::gallus_gallus]
# Used by gallus_gallus
......@@ -1475,7 +1510,7 @@ parser = UniProtParser
release_uri =
[source Uniprot/SPTREMBL::MULTI]
# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
# Used by aedes_aegypti, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis
name = Uniprot/SPTREMBL
download = Y
order = 20
......@@ -2226,6 +2261,21 @@ source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = ncRNA::erinaceus_europaeus
[species equus_caballus]
taxonomy_id = 9796
aliases = horse
source = EntrezGene::MULTI
source = GO::MULTI
source = InterproGO::MULTI
source = Interpro::MULTI
source = RefSeq_dna:equus_caballus
source = RefSeq_peptide::equus_caballus
source = UniGene::equus_caballus
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
source = Uniprot/Varsplic::MULTI
source = ncRNA::equus_caballus
[species felis_catus]
taxonomy_id = 9685
aliases = cat, fcatus, feliscatus, moggy, tiddles
......
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