From 3a3caf6272b60b5aa11c82bb7150435e9fbcea26 Mon Sep 17 00:00:00 2001
From: Ian Longden <ianl@sanger.ac.uk>
Date: Wed, 9 Aug 2006 14:17:53 +0000
Subject: [PATCH] Unigene no longer gotten from uniprot as it now has its own
file
---
misc-scripts/xref_mapping/XrefParser/UniProtParser.pm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm b/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
index 883a428a55..8ae9fd9133 100644
--- a/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/UniProtParser.pm
@@ -259,7 +259,9 @@ sub create_xrefs {
my ($deps) = $_ =~ /(DR\s+.+)/s; # /s allows . to match newline
my @dep_lines = split /\n/, $deps;
foreach my $dep (@dep_lines) {
- if($dep =~ /GO/){
+ #both GO and UniGene have the own sources so ignore those in the uniprot files
+ #as the uniprot data should be older
+ if($dep =~ /GO/ || $dep =~ /UniGene/){
next;
}
if ($dep =~ /^DR\s+(.+)/) {
--
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