From 3d9c5ad7253fb105ae4b1560414f70e0425f8ea9 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Wed, 29 Jan 2014 12:02:02 +0000
Subject: [PATCH] transcript counts can now be fetched using transcript_cnt and
transcript_acnt
---
modules/Bio/EnsEMBL/DBSQL/GenomeContainer.pm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/modules/Bio/EnsEMBL/DBSQL/GenomeContainer.pm b/modules/Bio/EnsEMBL/DBSQL/GenomeContainer.pm
index ae7e25aedc..d9f755815e 100644
--- a/modules/Bio/EnsEMBL/DBSQL/GenomeContainer.pm
+++ b/modules/Bio/EnsEMBL/DBSQL/GenomeContainer.pm
@@ -1167,7 +1167,7 @@ sub get_transcript_count {
$self->{'transcript_count'} = $transcript_count;
}
if (!defined $self->{'transcript_count'}) {
- $self->{'transcript_count'} = $self->_get_count('transcript');
+ $self->{'transcript_count'} = $self->_get_count('transcript_cnt');
}
return $self->{'transcript_count'};
}
@@ -1190,7 +1190,7 @@ sub get_alt_transcript_count {
$self->{'alt_transcript_count'} = $alt_transcript_count;
}
if (!defined $self->{'alt_transcript_count'}) {
- $self->{'alt_transcript_count'} = $self->_get_count('alt_transcript');
+ $self->{'alt_transcript_count'} = $self->_get_count('transcript_acnt');
}
return $self->{'alt_transcript_count'};
}
--
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