From 3d9e5947dcd0a4e3dd21678d3b8cd0c3e0c40e59 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?= <ak4@sanger.ac.uk> Date: Thu, 8 Mar 2007 13:48:21 +0000 Subject: [PATCH] Add release info URL for the GO data fetched from the EBI. --- .../xref_mapping/sql/populate_metadata.sql | 56 +++++++++---------- 1 file changed, 28 insertions(+), 28 deletions(-) diff --git a/misc-scripts/xref_mapping/sql/populate_metadata.sql b/misc-scripts/xref_mapping/sql/populate_metadata.sql index cdef1166f4..8b7d497c4f 100644 --- a/misc-scripts/xref_mapping/sql/populate_metadata.sql +++ b/misc-scripts/xref_mapping/sql/populate_metadata.sql @@ -284,7 +284,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d VALUES (3,7227,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate9.protein.gpff.gz',now(),now(),'RefSeqGPFFParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ -VALUES (1070,7227,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz',now(),now(),'GOParser'); +VALUES (1070,7227,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html',now(),now(),'GOParser'); INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser)\ VALUES (1300,7227,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html',now(),now(),'InterproParser'); @@ -330,7 +330,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date ## GO -INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 9606,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/gene_association.goa_human.gz', '', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 9606,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN/gene_association.goa_human.gz http://www.ebi.ac.uk/GOA/HUMAN_release.html', '', now(), now(), "GOParser"); ## HUGO INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1090, 9606,'LOCAL:HUGO/HUGO_TO_ENSG', '', now(), now(), "HUGO_ENSGParser"); @@ -404,7 +404,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1080, 10090,'ftp://ftp.informatics.jax.org/pub/reports/MRK_SwissProt_TrEMBL.rpt ftp://ftp.informatics.jax.org/pub/reports/MRK_Synonym.sql.rpt', '', now(), now(), "MGDParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 10090,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/MOUSE/gene_association.goa_mouse.gz', '', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 10090,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/MOUSE/gene_association.goa_mouse.gz http://www.ebi.ac.uk/GOA/MOUSE_release.html', '', now(), now(), "GOParser"); # Jax file INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 10090,'http://www.geneontology.org/cgi-bin/downloadGOGA.pl/gene_association.mgi.gz', '', now(), now(), "GOParser"); @@ -455,7 +455,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 10116,'ftp://ftp.ncbi.nih.gov/refseq/R_norvegicus/mRNA_Prot/rat.rna.fna.gz ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt', '', now(), now(), "RefSeqParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 10116,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/RAT/gene_association.goa_rat.gz', '', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 10116,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/RAT/gene_association.goa_rat.gz http://www.ebi.ac.uk/GOA/RAT_release.html', '', now(), now(), "GOParser"); ## RGD INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1200, 10116,'ftp://rgd.mcw.edu/pub/data_release/GENES', '', now(), now(), "RGDParser"); @@ -543,7 +543,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 9031,'ftp://ftp.ncbi.nih.gov/genomes/Gallus_gallus/RNA/rna.gbk.gz ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt', '', now(), now(), "RefSeqGPFFParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 9031,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', '', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 9031,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', '', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1300, 9031,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', '', now(), now(), "InterproParser"); @@ -617,7 +617,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 9615,'ftp://ftp.ncbi.nih.gov/genomes/Canis_familiaris/RNA/rna.gbk.gz ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt', '', now(), now(), "RefSeqGPFFParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 9615,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', '', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 9615,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', '', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1300, 9615,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', '', now(), now(), "InterproParser"); @@ -702,7 +702,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 7460,'ftp://ftp.ncbi.nih.gov/genomes/Apis_mellifera/RNA/rna.gbk.gz ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt', '', now(), now(), "RefSeqGPFFParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 7460,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', '', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1070, 7460,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', '', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (1300, 7460,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', '', now(), now(), "InterproParser"); @@ -742,7 +742,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 7719,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 7719,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -865,7 +865,7 @@ VALUES (3,51511,'ftp://ftp.ncbi.nih.gov/refseq/release/invertebrate/invertebrate ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 51511,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 51511,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -911,7 +911,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (2856, 7165,'LOCAL:Anopheles_symbol/GeneName_translation_UniqID.txt', now(), now(), "AnophelesSymbolParser"); # GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 7165,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 7165,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); # VectorBase Arrays INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (2857, 7165,'LOCAL:Anopheles_gambiae/EMBL/EMBL_MMC1_20k_v1.txt', now(), now(), "VbDirectParser"); @@ -942,7 +942,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (7159, 7159,'LOCAL:AedesGenBank/Aedes_proteinID.fa', now(), now(), "AedesGenBankParser"); # GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 7159,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 7159,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); # Vectorbase Arrays INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (2861, 7159,'LOCAL:Aedes_aegypti/JHU/JHU_AEG1.0_20k_v1.txt', now(), now(), "VbDirectParser"); @@ -972,7 +972,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (4, 9913,'ftp://ftp.ncbi.nih.gov/genomes/Bos_taurus/RNA/rna.gbk.gz ftp://ftp.ncbi.nih.gov/refseq/release/release-notes/RefSeq-release*.txt', '', now(), now(), "RefSeqGPFFParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9913,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9913,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9913,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', now(), now(), "InterproParser"); @@ -1247,7 +1247,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 13616,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 13616,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -1304,7 +1304,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 31033,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 31033,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -1391,7 +1391,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 4932,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 4932,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -1600,7 +1600,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 9544,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 9544,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -1625,7 +1625,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9785, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt', '', now(), now(), "UniProtVarSplicParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9785,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9785,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9785,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', now(), now(), "InterproParser"); @@ -1649,7 +1649,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9361, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt', '', now(), now(), "UniProtVarSplicParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9361,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9361,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9361,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', now(), now(), "InterproParser"); @@ -1674,7 +1674,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9986, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt', '', now(), now(), "UniProtVarSplicParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9986,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9986,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9986,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', now(), now(), "InterproParser"); @@ -1698,7 +1698,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9371, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt', '', now(), now(), "UniProtVarSplicParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9371,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9371,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9371,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', now(), now(), "InterproParser"); @@ -1718,7 +1718,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 9685, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt', '', now(), now(), "UniProtVarSplicParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9685,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 9685,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300, 9685,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', now(), now(), "InterproParser"); @@ -1735,7 +1735,7 @@ INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (2,69293 , 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt', '', now(), now(), "UniProtParser"); INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000,69293 , 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt', '', now(), now(), "UniProtVarSplicParser"); ## GO -INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070,69293 ,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070,69293 ,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300,69293 ,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz http://www.ebi.ac.uk/interpro/release_notes.html', now(), now(), "InterproParser"); # refseq @@ -1805,7 +1805,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 8090,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 8090,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -2033,7 +2033,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 59463,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 59463,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -2248,7 +2248,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 9258,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 9258,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -2481,7 +2481,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 9365,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 9365,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -2715,7 +2715,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 37347,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 37347,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ @@ -2947,7 +2947,7 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d ## GO INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -(1070, 43179,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); +(1070, 43179,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz http://www.ebi.ac.uk/GOA/SPTR_release.html', now(), now(), "GOParser"); ## Interpro INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES\ -- GitLab