diff --git a/misc-scripts/density_feature/seq_region_stats.pl b/misc-scripts/density_feature/seq_region_stats.pl index 535784c2d668f34107dfdeb04029f3a853abc386..a46444e2847638f8582673d2aa273e132192b8e6 100644 --- a/misc-scripts/density_feature/seq_region_stats.pl +++ b/misc-scripts/density_feature/seq_region_stats.pl @@ -1,13 +1,24 @@ use strict; +BEGIN { + my $ensembl_root = '/ensweb/wwwdev/server'; + unshift @INC, "$ensembl_root/modules"; + unshift @INC, "$ensembl_root/ensembl-draw/modules"; + unshift @INC, "$ensembl_root/ensembl/modules"; + unshift @INC, "$ensembl_root/ensembl-external/modules"; + unshift @INC, "$ensembl_root/ensembl-map/modules"; + unshift @INC, "$ensembl_root/ensembl-compara/modules"; + unshift @INC, "$ensembl_root/conf"; + unshift @INC, "$ensembl_root/bioperl-live"; +} + use Bio::EnsEMBL::DBSQL::DBAdaptor; -use Bio::EnsEMBL::Attribute; -my $host = 'ecs1g'; -my $user = 'ensadmin'; -my $pass = 'ensembl'; -my $dbname = 'homo_sapiens_core_20_34'; +my $host = 'localhost'; +my $user = 'ensadmin'; +my $pass = 'ensembl'; +my $dbname = 'mcvicker_homo_sapiens_core_20_34b'; my $port = '3306'; my $db = new Bio::EnsEMBL::DBSQL::DBAdaptor(-host => $host, @@ -16,7 +27,6 @@ my $db = new Bio::EnsEMBL::DBSQL::DBAdaptor(-host => $host, -pass => $pass, -dbname => $dbname); - my $slice_adaptor = $db->get_SliceAdaptor(); my $attrib_adaptor = $db->get_AttributeAdaptor();