diff --git a/modules/Bio/EnsEMBL/Utils/SchemaConversion.pm b/modules/Bio/EnsEMBL/Utils/SchemaConversion.pm index 3045181055b40a60fb10f45703dcd188e769fc80..44d343a73abce4ce376b93fb4308a28ef0371054 100644 --- a/modules/Bio/EnsEMBL/Utils/SchemaConversion.pm +++ b/modules/Bio/EnsEMBL/Utils/SchemaConversion.pm @@ -149,6 +149,8 @@ sub species_alias { return 'HomoSapiens' if $name =~ /homo/; return 'MusMusculus' if $name =~ /mus/; return 'DanioRerio' if $name =~ /danio/; + ##hack - should use own modules + return 'HomoSapiens' if $name =~ /sus/; die "invalid name of source database, please check configuration file"; } @@ -249,7 +251,7 @@ sub do_conversion { $self->conv_obj->create_meta_coord(); if ($self->conv_support->param('do_vega_sc')) { $self->conv_obj->copy_other_vega_tables(); - $self->conv_obj->update_clone_info(); + $self->conv_obj->update_clone_info(); $self->conv_obj->remove_supercontigs(); $self->conv_obj->copy_internal_clone_names(); $self->conv_obj->copy_assembly_exception;