diff --git a/misc-scripts/xref_mapping/XrefMapper/VBCoordinateMapper.pm b/misc-scripts/xref_mapping/XrefMapper/VBCoordinateMapper.pm index 2229965f34f64cf2a1c8155c58a0f2609f88e4c5..d9f9d75500e06addb8dcf874f463d78326ffe1d5 100644 --- a/misc-scripts/xref_mapping/XrefMapper/VBCoordinateMapper.pm +++ b/misc-scripts/xref_mapping/XrefMapper/VBCoordinateMapper.pm @@ -114,7 +114,7 @@ sub run_coordinatemapping { my $analysis_sql = qq( SELECT analysis_id FROM analysis - WHERE logic_name = 'xrefcoodinatemapping' + WHERE logic_name = 'xrefcoordinatemapping' AND parameters = ? ); @@ -125,7 +125,7 @@ sub run_coordinatemapping { if ( !defined($analysis_id) ) { $analysis_id = $core_dbh->selectall_arrayref( "SELECT analysis_id FROM analysis " - . "WHERE logic_name = 'xrefcoodinatemapping'" )->[0][0]; + . "WHERE logic_name = 'xrefcoordinatemapping'" )->[0][0]; if ( defined($analysis_id) && $do_upload ) { log_progress( "Will update 'analysis' table " @@ -145,7 +145,7 @@ sub run_coordinatemapping { } else { log_progress("Can not find analysis ID for this analysis:\n"); - log_progress(" logic_name = 'xrefcoodinatemapping'\n"); + log_progress(" logic_name = 'xrefcoordinatemapping'\n"); log_progress( " parameters = '%s'\n", $analysis_params ); if ($do_upload) { @@ -163,7 +163,7 @@ sub run_coordinatemapping { . 'VALUES(?, now(), ?, \N, \N, \N, ?, \N, \N, ?, ?, \N, \N, \N)'; my $sth = $core_dbh->prepare($sql); - $sth->execute( ++$analysis_id, 'xrefcoodinatemapping', + $sth->execute( ++$analysis_id, 'xrefcoordinatemapping', 'xref_mapper.pl', $analysis_params, 'CoordinateMapper.pm' ); }