From 43930206340d2aa5f689df9d8fb551a54802caf8 Mon Sep 17 00:00:00 2001
From: Graham McVicker <mcvicker@sanger.ac.uk>
Date: Tue, 23 Mar 2004 14:28:54 +0000
Subject: [PATCH] correctly populate DBEntries for SNPs
---
modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm b/modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm
index 1377876922..0f967ddd41 100644
--- a/modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm
+++ b/modules/Bio/EnsEMBL/Lite/SNPAdaptor.pm
@@ -106,9 +106,10 @@ sub fetch_all_by_Slice {
if(!$link) {
$link = Bio::EnsEMBL::DBEntry->new_fast
- ({'_dbname' => $link_db,
- '_primary_id' => $link_id});
- $self->{'link_cache'}->{"$link_db:$link_id"};
+ ({'dbname' => $link_db,
+ 'primary_id' => $link_id,
+ 'display_id' => $link_id});
+ $self->{'link_cache'}->{"$link_db:$link_id"} = $link;
}
push @links, $link;
--
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