From 43b2732504c1cde24632ae03ba4ab5f244932f43 Mon Sep 17 00:00:00 2001 From: Magali Ruffier <mr6@ebi.ac.uk> Date: Tue, 27 Aug 2013 09:57:22 +0000 Subject: [PATCH] added species_id column in meta table is not required for ontology database but allows for compatibility with metacontainer and schema version control like other databases --- .../ontology/ontology/meta.txt | 19 ++++++++++--------- .../ontology/ontology/table.sql | 1 + 2 files changed, 11 insertions(+), 9 deletions(-) diff --git a/modules/t/test-genome-DBs/ontology/ontology/meta.txt b/modules/t/test-genome-DBs/ontology/ontology/meta.txt index c97339c2be..6762e1a649 100644 --- a/modules/t/test-genome-DBs/ontology/ontology/meta.txt +++ b/modules/t/test-genome-DBs/ontology/ontology/meta.txt @@ -1,9 +1,10 @@ -1 schema_type ontology -2 OBO_file_date GO.obo/05:02:2013 16:56 -3 OBO_load_date GO.obo/Thu Feb 14 14:33:07 2013 -4 OBO_file_date SO.obo/14:11:2012 16:46 -5 OBO_load_date SO.obo/Thu Feb 14 14:33:14 2013 -6 OBO_file_date EFO.obo.new/04:01:2013 13:28 -7 OBO_load_date EFO.obo.new/Thu Feb 14 14:33:33 2013 -8 schema_version 73 -9 patch patch_72_73_a.sql|schema_version +1 schema_type ontology \N +2 OBO_file_date GO.obo/05:02:2013 16:56 \N +3 OBO_load_date GO.obo/Thu Feb 14 14:33:07 2013 \N +4 OBO_file_date SO.obo/14:11:2012 16:46 \N +5 OBO_load_date SO.obo/Thu Feb 14 14:33:14 2013 \N +6 OBO_file_date EFO.obo.new/04:01:2013 13:28 \N +7 OBO_load_date EFO.obo.new/Thu Feb 14 14:33:33 2013 \N +8 schema_version 73 \N +9 patch patch_72_73_a.sql|schema_version \N +10 patch patch_72_73_b.sql|meta \N diff --git a/modules/t/test-genome-DBs/ontology/ontology/table.sql b/modules/t/test-genome-DBs/ontology/ontology/table.sql index 991b78518b..593f3ca523 100644 --- a/modules/t/test-genome-DBs/ontology/ontology/table.sql +++ b/modules/t/test-genome-DBs/ontology/ontology/table.sql @@ -135,6 +135,7 @@ CREATE TABLE `meta` ( `meta_id` int(10) unsigned NOT NULL AUTO_INCREMENT, `meta_key` varchar(64) NOT NULL, `meta_value` varchar(128) DEFAULT NULL, + `species_id` int(1) unsigned DEFAULT NULL, PRIMARY KEY (`meta_id`), UNIQUE KEY `key_value_idx` (`meta_key`,`meta_value`) ) ENGINE=MyISAM ; -- GitLab