From 459ef50c2eb82178f3ecc5bf4c0065663bfd79bb Mon Sep 17 00:00:00 2001
From: Simon Potter <scp@sanger.ac.uk>
Date: Wed, 6 Mar 2002 16:58:26 +0000
Subject: [PATCH] minor bugs
---
misc-scripts/surgery/convert120_130.pl | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/misc-scripts/surgery/convert120_130.pl b/misc-scripts/surgery/convert120_130.pl
index bb02d2094c..13149d44cb 100644
--- a/misc-scripts/surgery/convert120_130.pl
+++ b/misc-scripts/surgery/convert120_130.pl
@@ -3,7 +3,7 @@
# see doc there
-use SchemaConvert;
+use SchemaConverter;
use DBI;
my $sourcedbh = DBI->connect("dbi:mysql:host=ensrv3.sanger.ac.uk;database=homo_sapiens_core_120", "ensro");
@@ -16,7 +16,7 @@ $sc->tmp_dir( "/work1/stabenau/db" );
$sc->custom_select( "assembly", "select s.fpcctg_name, c.chromosome_id, s.raw_id, s.chr_start, s.chr_end, s.fpcctg_start, s.fpcctg_end, s.raw_start, s.raw_end, s.raw_ori, s.type from chromosome c, static_golden_path s where s.chr_name = c.name" );
$sc->table_rename( "analysisprocess", "analysis" );
-$sc->column_rename( $targetDB, "analysis", "analysisId", "analysis_id" );
+$sc->column_rename( "analysis", "analysisId", "analysis_id" );
$sc->column_rename( "contig", "internal_id", "contig_id" );
$sc->column_rename( "contig", "id", "name" );
@@ -77,7 +77,7 @@ $sc->column_rename( "exon", "strand", "contig_strand" );
$sc->column_rename( "gene", "analysisId", "analysis_id" );
-$sc->table_rename( "repeat_feature", "r_feature" );
+$sc->table_rename( "repeat_feature", "repeat_feature" );
$sc->column_rename( "supporting_feature", "hid", "hit_id" );
$sc->column_rename( "supporting_feature", "hstart", "hit_start" );
--
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