diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index b9ed7821b8aacb0b2502a8d17db2dc7227b60aab..15dad3ce4cf29c8719483fa2d1326fb49a7afea0 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -2860,6 +2860,17 @@ parser = EG_DBParser release_uri = data_uri = script:host=>mysql-eg-pan-1,port=>4276,dbname=>EG_Xrefs, +[source ENA_GENE::MULTI] +# Used by aspergillus_niger +name = ENA_GENE +download = N +order = 70 +priority = 1 +prio_descr = +parser = +release_uri = +data_uri = + [source CADRE::MULTI] # Used by aspergillus_clavatus, aspergillus_flavus, aspergillus_fumigatus, aspergillus_nidulans, aspergillus_niger, aspergillus_oryzae, aspergillus_terreus, neosartorya_fischeri name = CADRE @@ -2926,6 +2937,39 @@ parser = release_uri = data_uri = +[source BROAD_F_oxysporum::MULTI] +# Used by fusarium_oxysporum +name = BROAD_F_oxysporum +download = N +order = 70 +priority = 1 +prio_descr = +parser = +release_uri = +data_uri = + +[source BROAD_g_zeae::MULTI] +# Used by gibberella_zeae +name = BROAD_G_zeae +download = N +order = 70 +priority = 1 +prio_descr = +parser = +release_uri = +data_uri = + +[source BROAD_G_moniliformis::MULTI] +# Used by gibberella_moniliformis +name = BROAD_G_moniliformis +download = N +order = 70 +priority = 1 +prio_descr = +parser = +release_uri = +data_uri = + [source wormpep_id::caenorhabditis_elegans] # Used by caenorhabditis_elegans name = wormpep_id @@ -3276,9 +3320,8 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -source = RFAM::MULTI -source = TRNASCAN_SE::MULTI -source = RNAMMER::MULTI +source = ncRNA::EG +source = misc_EG::EG [species aspergillus_oryzae] taxonomy_id = 5062 @@ -3348,6 +3391,23 @@ source = ncRNA::EG source = misc_EG::EG source = PHIbase::MULTI +[species mycosphaerella_graminicola] +taxonomy_id = 336722 +taxonomy_id = 54743 +aliases = mycosphaerellagraminicola, mgraminicola, Mycosphaerella graminicola, Mycosphaerella graminicola IPO323 +source = EntrezGene::MULTI +source = GO::MULTI +source = goslim_goa::EG +source = InterproGO::MULTI +source = Interpro::MULTI +source = RefSeq_dna::MULTI-fungi +source = RefSeq_peptide::MULTI-fungi +source = Uniprot/SPTREMBL::MULTI +source = Uniprot/SWISSPROT::MULTI +source = ncRNA::EG +source = misc_EG::EG +source = PHIbase::MULTI + [species trichoplax_adhaerens] taxonomy_id = 10228 aliases = trichoplaxadhaerens, tadhaerens, Trichoplax adhaerens, Trichoplax adhaerens Grell-BS-1999 @@ -4491,6 +4551,7 @@ source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = ncRNA::EG +source = misc_EG::EG [species phytophthora_sojae] taxonomy_id = 67593 @@ -4506,6 +4567,7 @@ source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = ncRNA::EG +source = misc_EG::EG [species phytophthora_ramorum] taxonomy_id = 164328 @@ -4521,6 +4583,7 @@ source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = ncRNA::EG +source = misc_EG::EG [species nectria_haematococca] taxonomy_id = 140110 @@ -4538,7 +4601,6 @@ source = Uniprot/SWISSPROT::MULTI source = PHIbase::MULTI source = ncRNA::EG - [species fusarium_oxysporum] taxonomy_id = 426428 taxonomy_id = 59765 @@ -4557,6 +4619,21 @@ source = PHIbase::MULTI source = ncRNA::EG source = misc_EG::EG +[species tuber_melanosporum] +taxonomy_id = 656061 +taxonomy_id = 39416 +aliases = +source = EntrezGene::MULTI +source = GO::MULTI +source = goslim_goa::EG +source = InterproGO::MULTI +source = Interpro::MULTI +source = RefSeq_dna::MULTI-fungi +source = RefSeq_peptide::MULTI-fungi +source = Uniprot/SPTREMBL::MULTI +source = Uniprot/SWISSPROT::MULTI + + [species gibberella_zeae] taxonomy_id = 229533 taxonomy_id = 5518