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Commit 5082a608 authored by Simon Potter's avatar Simon Potter
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fix to prevent duplicate TRF features being stored 

- needs testing
parent ca9e2638
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Showing with 8 additions and 1 deletion
modules/Bio/EnsEMBL/DBSQL/RepeatFeatureAdaptor.pm
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......@@ -258,7 +258,14 @@ sub store {
if ($cons->repeat_class eq 'trf') {
$rca->store($cons);
# Look for matches already stored
my @match = $rca->fetch_by_class_seq('trf', $cons->repeat_consensus);
if (@match) {
$cons->dbID($match[0]->dbID());
}
else {
$rca->store($cons);
}
} elsif ($cons->repeat_class eq 'Simple_repeat') {
......
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