From 51866703d40de818904d47084166adc9125b24d9 Mon Sep 17 00:00:00 2001 From: Steve Trevanion <st3@sanger.ac.uk> Date: Thu, 3 Sep 2009 11:37:20 +0000 Subject: [PATCH] minor change --- misc-scripts/analysis_description/analysis.descriptions | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/misc-scripts/analysis_description/analysis.descriptions b/misc-scripts/analysis_description/analysis.descriptions index e3b31750d3..3bb0ae0600 100644 --- a/misc-scripts/analysis_description/analysis.descriptions +++ b/misc-scripts/analysis_description/analysis.descriptions @@ -147,7 +147,7 @@ 144 other_est For various species, 'Expressed Sequence Tags' (ESTs) from <a rel="external" href="http://www.ncbi.nlm.nih.gov/dbEST/">dbEST</a> are aligned to the genome using <a rel="external" href="http://www.biomedcentral.com/1471-2105/6/31">Exonerate</a>. Various EST 1 {'type'=>'est'} 145 geneDensity Known gene density as calculated by <a rel="external" href="http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/ensembl/misc-scripts/density_feature/gene_density_calc.pl?root=ensembl&view=markup">gene_density_calc.pl</a>. Genes (density) 1 146 oligo Feature imported from <a rel="external" href="http://www.flybase.org">FlyBase</a>. Oligo 1 -147 otter_external See <a href="http://vega.sanger.ac.uk/info/about/man_annotation.html">the Vega website</a> for details of the approaches used for the annotation of external Vega genes Vega External gene 1 {'colour_key'=>'[gene.logic_name]_[gene.biotype]'} +147 otter_external See <a href="http://vega.sanger.ac.uk/info/about/man_annotation.html" target="external">the Vega website</a> for details of the approaches used for the annotation of external Vega genes Vega External gene 1 {'colour_key'=>'[gene.logic_name]_[gene.biotype]'} 148 PIRSF Protein domains and motifs from the <a rel="external" href="http://pir.georgetown.edu/pirwww/index.shtml">PIR (Protein Information Resource)</a> Superfamily database. PIRSF domain 1 {'type'=>'domain'} 149 Uniprot_non_vertebrate Non-vertebrate proteins from the <a rel="external" href="http://uniprot.org">UniProtKB</a> database, positioned on the genome through BLASTP of Genscan-predicted (non-mammalian) peptides to UniProtKB proteins. non-vertebrate UniProt prot. 1 150 medaka_cdna Medaka cDNAs from <a rel="external" href="http://www.ncbi.nlm.nih.gov/RefSeq/">NCBI RefSeq</a> and <a rel="external" href="http://www.ebi.ac.uk/embl/">EMBL</a> are aligned to the genome aligned to the genome using <a rel="external" href="http://genome.cshlp.org/cgi/content/abstract/14/5/988?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&volume=14&firstpage=988&resourcetype=HWCIT">GeneWise</a>. Medaka RefSeq/EMBL cDNA 1 {'default' => {'contigviewbottom' => 'stack'},'type' => 'cdna'} -- GitLab