diff --git a/docs/pipelines/fasta.html b/docs/pipelines/fasta.html index 0b07d26ef30c0592ac99eb71a3bdc0d122990dc6..95ba73b4811c749121bd3fe57bde4e682b070955 100644 --- a/docs/pipelines/fasta.html +++ b/docs/pipelines/fasta.html @@ -73,4 +73,12 @@ -reg_conf reg.pm -debug 2 \ -release 67 -species homo_sapiens -sequence_type_list '["dna"]' \ -base_path /path/to/dumps +</code></pre><h3 id="RunningGeneDumping">Running Gene Dumping</h3><pre><code> standaloneJob.pl Bio::EnsEMBL::Pipeline::FASTA::DumpFile \ + -reg_conf reg.pm -debug 2 \ + -release 67 -species homo_sapiens -sequence_type_list '["cdna"]' \ + -base_path /path/to/dumps +</code></pre><h3 id="RunningGeneDumping2">Running Gene Dumping</h3><pre><code> standaloneJob.pl Bio::EnsEMBL::Pipeline::FASTA::DumpFile \ + -reg_conf reg.pm -debug 2 \ + -release 67 -species homo_sapiens -sequence_type_list '["ncrna"]' \ + -base_path /path/to/dumps </code></pre></body></html> \ No newline at end of file diff --git a/docs/pipelines/fasta.textile b/docs/pipelines/fasta.textile index 3ee0a5da134998a2e3c3f197741589c08506052e..9ad9733397b262236aec65a6ddfb95cb15b1bb15 100644 --- a/docs/pipelines/fasta.textile +++ b/docs/pipelines/fasta.textile @@ -212,4 +212,20 @@ bc. -release 67 -species homo_sapiens -sequence_type_list '["dna"]' \ -base_path /path/to/dumps +h3. Running Gene Dumping +bc. + standaloneJob.pl Bio::EnsEMBL::Pipeline::FASTA::DumpFile \ + -reg_conf reg.pm -debug 2 \ + -release 67 -species homo_sapiens -sequence_type_list '["cdna"]' \ + -base_path /path/to/dumps + +h3. Running Gene Dumping + +bc. + standaloneJob.pl Bio::EnsEMBL::Pipeline::FASTA::DumpFile \ + -reg_conf reg.pm -debug 2 \ + -release 67 -species homo_sapiens -sequence_type_list '["ncrna"]' \ + -base_path /path/to/dumps + + \ No newline at end of file