From 53056ee186fe3ba47472ae60cece34ce97d5168b Mon Sep 17 00:00:00 2001 From: Andrew Yates <ayates@ebi.ac.uk> Date: Mon, 25 Jun 2012 22:44:52 +0000 Subject: [PATCH] Few more example command lines --- docs/pipelines/fasta.html | 8 ++++++++ docs/pipelines/fasta.textile | 16 ++++++++++++++++ 2 files changed, 24 insertions(+) diff --git a/docs/pipelines/fasta.html b/docs/pipelines/fasta.html index 0b07d26ef3..95ba73b481 100644 --- a/docs/pipelines/fasta.html +++ b/docs/pipelines/fasta.html @@ -73,4 +73,12 @@ -reg_conf reg.pm -debug 2 \ -release 67 -species homo_sapiens -sequence_type_list '["dna"]' \ -base_path /path/to/dumps +</code></pre><h3 id="RunningGeneDumping">Running Gene Dumping</h3><pre><code> standaloneJob.pl Bio::EnsEMBL::Pipeline::FASTA::DumpFile \ + -reg_conf reg.pm -debug 2 \ + -release 67 -species homo_sapiens -sequence_type_list '["cdna"]' \ + -base_path /path/to/dumps +</code></pre><h3 id="RunningGeneDumping2">Running Gene Dumping</h3><pre><code> standaloneJob.pl Bio::EnsEMBL::Pipeline::FASTA::DumpFile \ + -reg_conf reg.pm -debug 2 \ + -release 67 -species homo_sapiens -sequence_type_list '["ncrna"]' \ + -base_path /path/to/dumps </code></pre></body></html> \ No newline at end of file diff --git a/docs/pipelines/fasta.textile b/docs/pipelines/fasta.textile index 3ee0a5da13..9ad9733397 100644 --- a/docs/pipelines/fasta.textile +++ b/docs/pipelines/fasta.textile @@ -212,4 +212,20 @@ bc. -release 67 -species homo_sapiens -sequence_type_list '["dna"]' \ -base_path /path/to/dumps +h3. Running Gene Dumping +bc. + standaloneJob.pl Bio::EnsEMBL::Pipeline::FASTA::DumpFile \ + -reg_conf reg.pm -debug 2 \ + -release 67 -species homo_sapiens -sequence_type_list '["cdna"]' \ + -base_path /path/to/dumps + +h3. Running Gene Dumping + +bc. + standaloneJob.pl Bio::EnsEMBL::Pipeline::FASTA::DumpFile \ + -reg_conf reg.pm -debug 2 \ + -release 67 -species homo_sapiens -sequence_type_list '["ncrna"]' \ + -base_path /path/to/dumps + + \ No newline at end of file -- GitLab