From 532afec73560e520dd466c8e225d60af2e9dff89 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Fri, 21 Jun 2013 15:52:31 +0000
Subject: [PATCH] replaced ok tests with is tests
---
modules/t/assemblyException.t | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/modules/t/assemblyException.t b/modules/t/assemblyException.t
index a1a5acee6b..45279f9905 100644
--- a/modules/t/assemblyException.t
+++ b/modules/t/assemblyException.t
@@ -14,6 +14,7 @@ ok(1);
my $db = $multi->get_DBAdaptor('core');
my $sfa = $db->get_SimpleFeatureAdaptor();
+my $aexc_adaptor = $db->get_AssemblyExceptionFeatureAdaptor();
my $slice_adaptor = $db->get_SliceAdaptor();
##chromosome Y is a fake 'PAR' linked to chromosome 20
@@ -35,7 +36,7 @@ my $org_slice = $slice_adaptor->fetch_by_region('chromosome', '20',
$feats = $sfa->fetch_all_by_Slice($slice);
debug("Got " . scalar(@$feats));
-ok( @$feats == 9 );
+is( @$feats, 9 , "Fetched 9 features");
print_features($feats);
@@ -61,7 +62,7 @@ $feats = $sfa->fetch_all_by_Slice( $slice );
debug( "After storing retrieval" );
print_features($feats);
-ok(@$feats == 14);
+is(@$feats, 14, "Fetched 14 features");
@@ -90,7 +91,7 @@ $slice = $slice_adaptor->fetch_by_region('chromosome', '20_HAP1',
30_499_998,30_500_002);
debug($slice->seq);
-ok( $slice->seq() eq "GTNNN" );
+is( $slice->seq(), "GTNNN", "Fetched haplotype subslice");
$multi->restore();
--
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