From 53b81202344665a37eb836662f09ab0dcdf58225 Mon Sep 17 00:00:00 2001 From: Ian Longden <ianl@sanger.ac.uk> Date: Thu, 2 Sep 2010 09:14:51 +0000 Subject: [PATCH] added IKMC for mouse and removed the array type sources no longer used and tidied up a bit --- misc-scripts/xref_mapping/xref_config.ini | 236 +++++----------------- 1 file changed, 53 insertions(+), 183 deletions(-) diff --git a/misc-scripts/xref_mapping/xref_config.ini b/misc-scripts/xref_mapping/xref_config.ini index 71ece2dbc0..9fd41ba295 100644 --- a/misc-scripts/xref_mapping/xref_config.ini +++ b/misc-scripts/xref_mapping/xref_config.ini @@ -238,7 +238,6 @@ source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -source = Uniprot/Varsplic::MULTI [species anolis_carolinensis] taxonomy_id = 28377 @@ -289,61 +288,6 @@ parser = IxodesCAPParser release_uri = data_uri = file:Ixodes_scapularis/ixodes_CAP.fa -[source AgilentCGH::homo_sapiens] -# Used by homo_sapiens -name = AgilentCGH -download = Y -order = 50 -priority = 1 -prio_descr = -parser = AgilentParser -release_uri = -data_uri = file:AgilentCGH/HumanCGH.fasta - -[source AgilentProbe::danio_rerio] -# Used by danio_rerio -name = AgilentProbe -download = Y -order = 50 -priority = 1 -prio_descr = -parser = AgilentParser -release_uri = -data_uri = file:AgilentProbe/ZebrafishExpression.fasta - -[source AgilentProbe::homo_sapiens] -# Used by homo_sapiens -name = AgilentProbe -download = Y -order = 50 -priority = 1 -prio_descr = -parser = AgilentParser -release_uri = -data_uri = file:AgilentProbe/HumanExpression.fasta - -[source AgilentProbe::mus_musculus] -# Used by mus_musculus -name = AgilentProbe -download = Y -order = 50 -priority = 1 -prio_descr = -parser = AgilentParser -release_uri = -data_uri = file:AgilentProbe/MouseExpression.fasta - -[source AgilentProbe::rattus_norvegicus] -# Used by rattus_norvegicus -name = AgilentProbe -download = Y -order = 50 -priority = 1 -prio_descr = -parser = AgilentParser -release_uri = -data_uri = file:AgilentProbe/RatExpression.fasta - [source Anopheles_symbol::anopheles_gambiae] # Used by anopheles_gambiae name = Anopheles_symbol @@ -1107,6 +1051,58 @@ parser = HGNCParser release_uri = data_uri = + +[source IKMCs_KOs::mus_musculus] +name = IKMCs_KOs +download = Y +order = 40 +priority = 1 +prio_descr = +parser = IKMCParser +release_uri = +data_uri = file:Mus_Musculus/IKMC/ensembl_ikmc_xref.txt + +[source IKMC_No_products_available_yet::mus_musculus] +name = IKMC_No_products_available_yet +download = N +order = 40 +priority = 1 +prio_descr = +parser = IKMCParser +release_uri = +data_uri = + +[source IKMC_Vector_available::mus_musculus] +name = IKMC_Vector_available +download = N +order = 40 +priority = 1 +prio_descr = +parser = IKMCParser +release_uri = +data_uri = + +[source IKMC_ES_cells_available::mus_musculus] +name = IKMC_ES_cells_available +download = N +order = 40 +priority = 1 +prio_descr = +parser = IKMCParser +release_uri = +data_uri = + +[source IKMC_Mice_available::mus_musculus] +name = IKMC_Mice_available +download = N +order = 40 +priority = 1 +prio_descr = +parser = IKMCParser +release_uri = +data_uri = + + [source IMGT/GENE_DB::homo_sapiens] # Used by homo_sapiens name = IMGT/GENE_DB @@ -1221,50 +1217,6 @@ parser = IPIParser release_uri = data_uri = ftp://ftp.ebi.ac.uk/pub/databases/IPI/current/ipi.RAT.fasta.gz -[source Illumina_V1::homo_sapiens] -# Used by homo_sapiens -name = Illumina_V1 -download = Y -order = 50 -priority = 1 -prio_descr = -parser = FastaParser -release_uri = -data_uri = file:Illumina_V1/Human_WG-6.fa - -[source Illumina_V1::mus_musculus] -# Used by mus_musculus -name = Illumina_V1 -download = Y -order = 50 -priority = 1 -prio_descr = -parser = FastaParser -release_uri = -data_uri = file:Illumina_V1/Mouse-6_V1.fa - -[source Illumina_V2::mus_musculus] -# Used by mus_musculus -name = Illumina_V2 -download = Y -order = 50 -priority = 1 -prio_descr = -parser = IlluminaWGParser -release_uri = -data_uri = file:Illumina_V2/MouseWG-6_V2_0_R1_11278593_A.txt - -[source Illumina_V2::homo_sapiens] -# Used by homo_sapiens -name = Illumina_V2 -download = Y -order = 50 -priority = 1 -prio_descr = -parser = IlluminaParser -release_uri = -data_uri = file:Illumina_V2/Human-6_v2_sequence.csv - [source Interpro::MULTI] # Used by aedes_aegypti, anolis_carolinensis, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, equus_caballus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, ixodes__scapularis, loxodonta_africana, macaca_mulatta, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, pan_troglodytes,pongo_pygmaeus, oryzias_latipes, rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, taeniopygia_guttata, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis,thalassiosira_pseudonana, phaeodactylum_tricornutum name = Interpro @@ -2306,17 +2258,6 @@ parser = UniProtParser_descriptions_only release_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt data_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz -[source Uniprot/Varsplic::MULTI] -# Used by aedes_aegypti, anolis_carolinensis, anopheles_gambiae, apis_mellifera, bos_taurus, caenorhabditis_elegans, canis_familiaris, ciona_intestinalis, ciona_savignyi, danio_rerio, dasypus_novemcinctus, echinops_telfairi, erinaceus_europaeus, felis_catus, gallus_gallus, gasterosteus_aculeatus, homo_sapiens, ixodes_scapularis, loxodonta_africana, monodelphis_domestica, mus_musculus, myotis_lucifugus, ochotona_princeps, ornithorhynchus_anatinus, oryctolagus_cuniculus, oryzias_latipes, pan_troglodytes, pongo_pygmaeus,rattus_norvegicus, saccharomyces_cerevisiae, spermophilus_tridecemlineatus, taeniopygia_guttata, takifugu_rubripes, tupaia_belangeri, xenopus_tropicalis, phaeodactylum_tricornutum, thalassiosira_pseudonana -name = Uniprot/Varsplic -download = Y -order = 30 -priority = 1 -prio_descr = -parser = UniProtVarSplicParser -release_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/reldate.txt -data_uri = ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz - [source Uniprot::EMBL-predicted] # Special source used in UniProtParser. No species uses this source. name = EMBL_predicted @@ -2417,7 +2358,6 @@ parser = done_in_official_naming release_uri = - [source Clone_based_vega_transcript::homo_sapiens] name = Clone_based_vega_transcript download = N @@ -2748,7 +2688,6 @@ source = Interpro::MULTI source = UniGene::aedes_aegypti source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species ailuropoda_melanoleuca] taxonomy_id = 9646 @@ -2766,7 +2705,6 @@ source = Uniprot/SWISSPROT::MULTI taxonomy_id = 7165 taxonomy_id = 180454 aliases = agambiae, anopheles, anophelesgambiae, mosquito -#source = Anopheles_symbol::anopheles_gambiae source = Celera_Pep::anopheles_gambiae source = Celera_Trans::anopheles_gambiae source = VB_Community_Symbol::anopheles_gambiae @@ -2780,7 +2718,6 @@ source = RefSeq_peptide::MULTI-invertebrate source = UniGene::anopheles_gambiae source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species apis_mellifera] taxonomy_id = 7460 @@ -2795,7 +2732,6 @@ source = RefSeq_peptide::apis_mellifera source = UniGene::apis_mellifera source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species aspergillus_clavatus] taxonomy_id = 5057 @@ -2810,7 +2746,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2828,7 +2763,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2843,7 +2777,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2859,7 +2792,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2875,7 +2807,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2892,7 +2823,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2910,7 +2840,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2928,7 +2857,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2946,7 +2874,6 @@ source = RefSeq_dna::MULTI-fungi source = RefSeq_peptide::MULTI-fungi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = RFAM::MULTI source = TRNASCAN-SE::MULTI-asp source = RNAMMER::MULTI-asp @@ -2964,7 +2891,6 @@ source = RefSeq_peptide::bos_taurus source = UniGene::bos_taurus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI source = goslim_goa::MULTI @@ -2981,7 +2907,6 @@ source = RefSeq_peptide::MULTI-invertebrate source = UniGene::caenorhabditis_elegans source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = wormpep_id::caenorhabditis_elegans source = wormpep_id::caenorhabditis_elegans#01 @@ -2997,7 +2922,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species canis_familiaris] taxonomy_id = 9615 @@ -3012,7 +2936,6 @@ source = RefSeq_peptide::canis_familiaris source = UniGene::canis_familiaris source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species ciona_intestinalis] @@ -3028,7 +2951,6 @@ source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::ciona_intestinalis source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = cint_aniseed_jgi_v1::ciona_intestinalis source = cint_aniseed_jgi_v2::ciona_intestinalis source = cint_jgi_v1::ciona_intestinalis @@ -3049,7 +2971,6 @@ source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::ciona_savignyi source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species quinquefasciatus] @@ -3062,13 +2983,11 @@ source = Interpro::MULTI source = UniGene::culex_quinquefasciatus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::culex_pipiens [species danio_rerio] taxonomy_id = 7955 aliases = danio, daniorerio, drerio, zebrafish -#source = AgilentProbe::danio_rerio source = EntrezGene::MULTI source = GO::danio_rerio source = goslim_goa::MULTI @@ -3080,7 +2999,6 @@ source = RefSeq_peptide::danio_rerio source = UniGene::danio_rerio source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ZFIN_ID::danio_rerio source = ncRNA::MULTI @@ -3094,7 +3012,6 @@ source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species dictyostelium_discoideum] @@ -3110,7 +3027,6 @@ source = RefSeq_dna::MULTI-protozoa source = RefSeq_peptide::MULTI-protozoa source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species dipodomys_ordii] taxonomy_id = 10020 @@ -3124,7 +3040,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species drosophila_melanogaster] @@ -3146,9 +3061,6 @@ source = MEROPS::drosophila_melanogaster source = miRBase::drosophila_melanogaster source = TransFac::drosophila_melanogaster source = FlyReactome::drosophila_melanogaster -#source = Uniprot/SPTREMBL::drosophila_melanogaster -#source = Uniprot/SWISSPROT::drosophila_melanogaster -#source = Uniprot/Varsplic::MULTI??? [species drosophila_pseudoobscura] taxonomy_id = 7237 @@ -3162,9 +3074,6 @@ source = RefSeq_dna::MULTI-invertebrate source = RefSeq_peptide::MULTI-invertebrate source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/SPTREMBL::drosophila_melanogaster -#source = Uniprot/SWISSPROT::drosophila_pseudoobscura -#source = Uniprot/Varsplic::MULTI??? source = flybase_gene_id::drosophila_pseudoobscura source = EPD::drosophila_pseudoobscura source = GPCR::drosophila_pseudoobscura @@ -3317,9 +3226,7 @@ source = Uniprot/SWISSPROT::MULTI source = flybase_gene_id::drosophila_virilis source = EPD::drosophila_virilis source = MEROPS::drosophila_virilis -#source = TF::drosophila_virilis source = GPCR::drosophila_virilis -#source = GLEANR::drosophila_virilis [species echinops_telfairi] taxonomy_id = 9371 @@ -3331,7 +3238,6 @@ source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species erinaceus_europaeus] @@ -3347,7 +3253,6 @@ source = RefSeq_peptide::MULTI-vertebrate_mammalian source = UniGene::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species equus_caballus] @@ -3363,7 +3268,6 @@ source = RefSeq_peptide::equus_caballus source = UniGene::equus_caballus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species felis_catus] @@ -3376,7 +3280,6 @@ source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species gallus_gallus] @@ -3393,7 +3296,6 @@ source = RefSeq_peptide::gallus_gallus source = UniGene::gallus_gallus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species gasterosteus_aculeatus] @@ -3409,7 +3311,6 @@ source = RefSeq_dna::gasterosteus_aculeatus source = RefSeq_peptide::MULTI-vertebrate_other source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species gorilla_gorilla] @@ -3424,7 +3325,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI @@ -3441,7 +3341,6 @@ source = InterproGO::MULTI source = HGNC::homo_sapiens source = HGNC::homo_sapiens#01 source = HGNC::homo_sapiens#02 -source = IMGT/GENE_DB::homo_sapiens source = IPI::homo_sapiens source = Interpro::MULTI source = MIM::homo_sapiens @@ -3470,7 +3369,6 @@ source = Interpro::MULTI source = UniGene::ixodes_scapularis source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species loxodonta_africana] taxonomy_id = 9785 @@ -3482,7 +3380,6 @@ source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian @@ -3514,25 +3411,21 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = UniGene::monodelphis_domestica source = ncRNA::MULTI [species mus_musculus] taxonomy_id = 10090 aliases = mmusculus, mouse, musmusculus -#source = AgilentProbe::mus_musculus source = CCDS::mus_musculus -#source = Codelink::mus_musculus source = EntrezGene::MULTI source = GO::mus_musculus source = GO::mus_musculus#01 source = goslim_goa::MULTI source = InterproGO::MULTI source = IMGT/GENE_DB::mus_musculus +source = IKMCs_KOs::mus_musculus source = IPI::mus_musculus -#source = Illumina_V1::mus_musculus -#source = Illumina_V2::mus_musculus source = MGI::mus_musculus#02 source = MGI::mus_musculus#03 source = MGI::mus_musculus#04 @@ -3562,7 +3455,6 @@ source = RefSeq_peptide::MULTI-vertebrate_mammalian source = UniGene::myotis_lucifugus source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species ochotona_princeps] @@ -3577,7 +3469,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species ornithorhynchus_anatinus] @@ -3591,7 +3482,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = Oxford_FGU_Oa_tscript::ornithorhynchus_anatinus source = Oxford_FGU_Oa_gene::ornithorhynchus_anatinus source = Platypus_olfactory_receptor::ornithorhynchus_anatinus @@ -3607,7 +3497,6 @@ source = InterproGO::MULTI source = Interpro::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species oryzias_latipes] @@ -3623,7 +3512,6 @@ source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = UniProt::protein_id source = Uniprot::EMBL source = ncRNA::MULTI @@ -3640,7 +3528,6 @@ source = RefSeq_dna::pan_troglodytes source = RefSeq_peptide::pan_troglodytes source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species pongo_pygmaeus] @@ -3653,11 +3540,9 @@ source = InterproGO::MULTI source = Interpro::MULTI source = RefSeq_dna::pongo_pygmaeus source = RefSeq_peptide::pongo_pygmaeus -#source = UniGene::pongo_pygmaeus source = UniGene::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species procavia_capensis] @@ -3672,7 +3557,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI @@ -3688,7 +3572,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species rattus_norvegicus] @@ -3723,7 +3606,6 @@ source = RefSeq_peptide::MULTI-fungi source = SGD::saccharomyces_cerevisiae source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species phaeodactylum_tricornutum] taxonomy_id = 2850 @@ -3738,7 +3620,6 @@ source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species thalassiosira_pseudonana] @@ -3754,7 +3635,6 @@ source = RefSeq_dna::MULTI-complete source = RefSeq_peptide::MULTI-complete source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI [species spermophilus_tridecemlineatus] taxonomy_id = 43179 @@ -3769,7 +3649,6 @@ source = RefSeq_peptide::MULTI-vertebrate_mammalian source = UniGene::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species taeniopygia_guttata] @@ -3785,7 +3664,6 @@ source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::taeniopygia_guttata source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species takifugu_rubripes] @@ -3801,7 +3679,6 @@ source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::takifugu_rubripes source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species tarsius_syrichta] @@ -3816,7 +3693,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species tetraodon_nigroviridis] @@ -3831,7 +3707,6 @@ source = RefSeq_dna::MULTI-vertebrate_other source = RefSeq_peptide::MULTI-vertebrate_other source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI source = Genoscope_pred_gene::tetraodon_nigroviridis source = Genoscope_pred_transcript::tetraodon_nigroviridis @@ -3852,7 +3727,6 @@ source = RefSeq_peptide::MULTI-vertebrate_mammalian source = UniGene::MULTI source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species tursiops_truncatus] @@ -3867,7 +3741,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species vicugna_pacos] @@ -3882,7 +3755,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species choloepus_hoffmanni] @@ -3897,7 +3769,6 @@ source = RefSeq_dna::MULTI-vertebrate_mammalian source = RefSeq_peptide::MULTI-vertebrate_mammalian source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = ncRNA::MULTI [species xenopus_tropicalis] @@ -3913,6 +3784,5 @@ source = RefSeq_peptide::MULTI-vertebrate_other source = UniGene::xenopus_tropicalis source = Uniprot/SPTREMBL::MULTI source = Uniprot/SWISSPROT::MULTI -#source = Uniprot/Varsplic::MULTI source = Xenopus_Jamboree::xenopus_tropicalis source = ncRNA::MULTI -- GitLab