updated to version 94

misc-scripts/ontology/sql/patch_93_94_a.sql

+-- Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
+-- Copyright [2016-2018] EMBL-European Bioinformatics Institute
+--
+-- Licensed under the Apache License, Version 2.0 (the "License");
+-- you may not use this file except in compliance with the License.
+-- You may obtain a copy of the License at
+--
+--      http://www.apache.org/licenses/LICENSE-2.0
+--
+-- Unless required by applicable law or agreed to in writing, software
+-- distributed under the License is distributed on an "AS IS" BASIS,
+-- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+-- See the License for the specific language governing permissions and
+-- limitations under the License.
+
+# patch_93_94_a.sql
+#
+# Title: Update schema version.
+#
+# Description:
+#   Update schema_version in meta table to 94.
+
+UPDATE meta SET meta_value='94' WHERE meta_key='schema_version';
+
+# Patch identifier
+INSERT INTO meta (species_id, meta_key, meta_value)
+  VALUES (NULL, 'patch', 'patch_93_94_a.sql|schema_version');

misc-scripts/ontology/sql/tables.sql

@@ -31,11 +31,11 @@ CREATE TABLE meta (
 # Add schema type and schema version to the meta table
 INSERT INTO meta (meta_key, meta_value) VALUES
   ('schema_type', 'ontology'),
-  ('schema_version', '93');
+  ('schema_version', '94');
 
 # Patches included in this schema file
 INSERT INTO meta (meta_key, meta_value)
-  VALUES ('patch', 'patch_92_93_a.sql|schema_version');
+  VALUES ('patch', 'patch_93_94_a.sql|schema_version');
 
 
 CREATE TABLE ontology (

modules/Bio/EnsEMBL/ApiVersion.pm

@@ -56,7 +56,7 @@ use base qw( Exporter );
 
 our @EXPORT = qw( software_version );
 
-my $API_VERSION = 93;
+my $API_VERSION = 94;
 
 sub software_version { return $API_VERSION }
 

modules/t/test-genome-DBs/circ/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Fri Apr  6 15:15:57 2018
+-- Created on Tue Apr 24 11:41:38 2018
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/circ/core/meta.txt

@@ -39,7 +39,7 @@
 95	\N	patch	patch_83_84_c.sql|protein_feature_unique
 96	\N	patch	patch_83_84_d.sql|longer_synonym
 1	\N	schema_type	core
-2	\N	schema_version	93
+2	\N	schema_version	94
 8	1	assembly.accession	GCA_000292705.1
 10	1	assembly.date	2012-08
 7	1	assembly.default	GCA_000292705.1
@@ -119,3 +119,4 @@
 119	\N	patch	patch_92_93_a.sql|schema_version
 120	\N	patch	patch_92_93_b.sql|biotype_table
 121	\N	patch	patch_92_93_c.sql|collate_index_interpro
+122	\N	patch	patch_93_94_a.sql|schema_version

modules/t/test-genome-DBs/circ/core/table.sql

@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=122 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=123 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Fri Apr  6 15:16:01 2018
+-- Created on Tue Apr 24 11:41:49 2018
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/homo_sapiens/core/meta.txt

-1	\N	schema_version	93
+1	\N	schema_version	94
 2	1	assembly.default	NCBI34
 3	1	species.taxonomy_id	9606
 26	1	species.classification	Homo sapiens
@@ -98,3 +98,4 @@
 165	\N	patch	patch_92_93_a.sql|schema_version
 166	\N	patch	patch_92_93_b.sql|biotype_table
 167	\N	patch	patch_92_93_c.sql|collate_index_interpro
+168	\N	patch	patch_93_94_a.sql|schema_version

modules/t/test-genome-DBs/homo_sapiens/core/table.sql

@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=168 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=169 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Fri Apr  6 15:16:04 2018
+-- Created on Tue Apr 24 11:42:00 2018
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/homo_sapiens/empty/meta.txt

-1	\N	schema_version	93
+1	\N	schema_version	94
 2	1	assembly.default	NCBI34
 33	1	species.classification	Chordata
 32	1	species.classification	Vertebrata
@@ -98,3 +98,4 @@
 147	\N	patch	patch_92_93_a.sql|schema_version
 148	\N	patch	patch_92_93_b.sql|biotype_table
 149	\N	patch	patch_92_93_c.sql|collate_index_interpro
+150	\N	patch	patch_93_94_a.sql|schema_version

modules/t/test-genome-DBs/homo_sapiens/empty/table.sql

@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=150 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=151 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Fri Apr  6 15:16:07 2018
+-- Created on Tue Apr 24 11:42:12 2018
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/homo_sapiens/patch/meta.txt

-1	\N	schema_version	93
+1	\N	schema_version	94
 2014	1	species.classification	Haplorrhini
 40	1	assembly.default	GRCh37
 41	1	assembly.date	2009-02
@@ -103,3 +103,4 @@
 2110	\N	patch	patch_92_93_a.sql|schema_version
 2111	\N	patch	patch_92_93_b.sql|biotype_table
 2112	\N	patch	patch_92_93_c.sql|collate_index_interpro
+2113	\N	patch	patch_93_94_a.sql|schema_version

modules/t/test-genome-DBs/homo_sapiens/patch/table.sql

@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=2113 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=2114 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/mapping/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Fri Apr  6 15:16:11 2018
+-- Created on Tue Apr 24 11:42:24 2018
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/mapping/core/meta.txt

-1	\N	schema_version	93
+1	\N	schema_version	94
 2	1	assembly.default	MULTIMAP
 3	1	species.taxonomy_id	1
 4	1	assembly.mapping	chromosome:MULTIMAP#contig
@@ -59,3 +59,4 @@
 152	\N	patch	patch_92_93_a.sql|schema_version
 153	\N	patch	patch_92_93_b.sql|biotype_table
 154	\N	patch	patch_92_93_c.sql|collate_index_interpro
+155	\N	patch	patch_93_94_a.sql|schema_version

modules/t/test-genome-DBs/mapping/core/table.sql

@@ -489,7 +489,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=155 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=156 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/multi/compara/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Fri Apr  6 15:16:13 2018
+-- Created on Tue Apr 24 11:42:33 2018
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/mus_musculus/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Fri Apr  6 15:16:17 2018
+-- Created on Tue Apr 24 11:42:43 2018
 -- 
 
 BEGIN TRANSACTION;