From 540a8afc3bc99bc8af27d60080b374484113a937 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Tue, 5 Oct 2004 08:11:01 +0000
Subject: [PATCH] Bug fix: was preserving newlines in sequence part of RefSeq
.rna.fna files.
---
misc-scripts/xref_mapping/RefSeqParser.pm | 3 +++
1 file changed, 3 insertions(+)
diff --git a/misc-scripts/xref_mapping/RefSeqParser.pm b/misc-scripts/xref_mapping/RefSeqParser.pm
index 513835f72f..86b6b43d30 100644
--- a/misc-scripts/xref_mapping/RefSeqParser.pm
+++ b/misc-scripts/xref_mapping/RefSeqParser.pm
@@ -69,6 +69,9 @@ sub create_xrefs {
chomp $entry;
my ($header, $sequence) = split (/\n/, $entry, 2);
$sequence =~ s/^>//;
+ # remove newlines
+ my @seq_lines = split (/\n/, $sequence);
+ $sequence = join("", @seq_lines);
(my $gi, my $n, my $ref, my $acc, my $description) = split(/\|/, $header);
my ($species, $mrna);
--
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