From 55073aa58f7fbeaa11c4235c171734cc38fe6623 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?=
<ak4@sanger.ac.uk>
Date: Fri, 30 Nov 2007 15:17:59 +0000
Subject: [PATCH] Make an exception for the 'bdgpinsituexpr' source.
---
.../xref_mapping/XrefParser/FlybaseParser.pm | 15 ++++++++++++---
1 file changed, 12 insertions(+), 3 deletions(-)
diff --git a/misc-scripts/xref_mapping/XrefParser/FlybaseParser.pm b/misc-scripts/xref_mapping/XrefParser/FlybaseParser.pm
index 82f5bee30c..c63fc84941 100644
--- a/misc-scripts/xref_mapping/XrefParser/FlybaseParser.pm
+++ b/misc-scripts/xref_mapping/XrefParser/FlybaseParser.pm
@@ -238,9 +238,18 @@ sub run {
if ( exists( $xref_ids{$source_name}{$accession} ) ) {
$xref_id = $xref_ids{$source_name}{$accession};
} else {
- $xref_id =
- $self->add_xref( $accession, undef, $accession, '',
- $source_id, $species_id );
+ # The Dbxref 'bdgpinsituexpr' needs case sensitivity, just
+ # like the FlyBase Names, so use the ID as the accession
+ # for this source.
+ if ( $dbxref_name eq 'bdgpinsituexpr' ) {
+ $xref_id =
+ $self->add_xref( $id, undef, $accession, '',
+ $source_id, $species_id );
+ } else {
+ $xref_id =
+ $self->add_xref( $accession, undef, $accession, '',
+ $source_id, $species_id );
+ }
$xref_ids{$source_name}{$accession} = $xref_id;
}
--
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