From 56368a572b28c8e2296e3442343caeec6046f3d4 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Wed, 12 Jun 2013 13:16:14 +0000
Subject: [PATCH] ENSCORESW-508: warn if no species.production_name found
---
modules/Bio/EnsEMBL/Utils/CliHelper.pm | 3 +++
1 file changed, 3 insertions(+)
diff --git a/modules/Bio/EnsEMBL/Utils/CliHelper.pm b/modules/Bio/EnsEMBL/Utils/CliHelper.pm
index b4a62b0006..6249b8267e 100644
--- a/modules/Bio/EnsEMBL/Utils/CliHelper.pm
+++ b/modules/Bio/EnsEMBL/Utils/CliHelper.pm
@@ -202,6 +202,9 @@ sub get_dba_args_for_opts {
->execute(
"SELECT species_id,meta_value FROM $dbname.meta WHERE meta_key='species.production_name'"
);
+ if ( scalar( @{$species_ids} ) == 0 ) {
+ croak "No species.production_name found in database";
+ }
if ( scalar( @{$species_ids} ) > 1 ) {
$multi = 1;
}
--
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