diff --git a/misc-scripts/attribute_types/attrib_type.txt b/misc-scripts/attribute_types/attrib_type.txt index 4baed576307a52415e9a6e14bab69b0be6d9afa8..cf4e5178d6f79e9f6bb9fa30f7ef33f68819027d 100644 --- a/misc-scripts/attribute_types/attrib_type.txt +++ b/misc-scripts/attribute_types/attrib_type.txt @@ -19,7 +19,7 @@ 3 synonym Synonym -4 name Name +4 name Name Alternative/long name 5 type Type of feature @@ -66,8 +66,8 @@ 15 miRNA Micro RNA Coordinates of the mature miRNA # A sequence region that you consider not part of the reference genome should -# be tagged as non_ref in seq_region_attrib. Chromosome 6 haplotypes in human are -# exmaples of that. +# be tagged as non_ref in seq_region_attrib. Chromosome 6 haplotypes in human +# are exmaples of that. 16 non_ref Non Reference Non Reference Sequence Region 17 sanger_project Sanger Project name @@ -98,5 +98,27 @@ 30 BACend_flag BAC end flags -#used by (Vega) web code to link WebFPC +# used by Vega web code to link WebFPC 31 fpc_clone_id fpc clone + +# additional gene counts for Vega (see GeneCount for general description) +32 NovelCDSCount 14:Novel CDS Total Number of Novel CDSs +33 NovelTransCount 16:Novel transcripts Total Number of Novel transcripts +34 PutTransCount 24:Putative transcripts Total Number of Putative transcripts +35 PredTransCount 30:Predicted transcripts Total Number of Predicted transcripts +36 IgSegCount 26:Ig segments Total Number of Ig Segments +37 IgPsSegCount 28:Ig pseudogene Segments Total Number of Ig Pseudogene Segments +38 TotPsCount 18:Total pseudogenes Total Number of Pseudogenes +39 UnclassPsCount 23:Unclassified pseudogenes Number of Unclassified pseudogenes +40 ProcPsCount 20:Processed pseudogenes Number of Processed pseudogenes +41 UnprocPsCount 22:Unprocessed pseudogenes Number of Unprocessed pseudogenes +42 KnwnprogCount 13:Known genes (in progress) Number of Known Genes in progress +43 NovCDSprogCount 15:Novel CDS (in progress) Number of novel CDS in progress + +# Vega annotation stats +44 AnnotSeqLength 03:Annotated sequence length Total length of annotated clone sequence +45 TotCloneNum 08:Total number of clones Total number of clones +46 NumAnnotClone 10:Number of annotated clones Number of annotated clones + +# Acknowledgements for manual annotation of this seq_region +47 ack Acknowledgement Acknowledgement