diff --git a/misc-scripts/xref_mapping/sql/populate_metadata.sql b/misc-scripts/xref_mapping/sql/populate_metadata.sql index d03cdb54a467e9cf697c9ed2e8a7b1fcc271db2e..07af3e56cddc3931e218d85c83527516c2d45488 100644 --- a/misc-scripts/xref_mapping/sql/populate_metadata.sql +++ b/misc-scripts/xref_mapping/sql/populate_metadata.sql @@ -33,6 +33,7 @@ INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (7165,180454 INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (13616,13616, 'monodelphis_domestica', 'mono,opossum,possum,monodelphis,monodelphisdomestica'); INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (9544, 9544, 'macaca_mulatta', 'rmacaque, rhesus, rhesus macaque, macaque'); +INSERT INTO species (species_id, taxonomy_id, name, aliases) VALUES (7159, 7159, 'aedes_aegypti', 'aedes,aedesaegypti,aaegypti'); ################################################################################ @@ -780,6 +781,26 @@ INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_d # -------------------------------------------------------------------------------- +###### Aedes + +# Uniprot +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1,7159,'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.dat.gz',now(),now(),'UniProtParser'); + +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (2,7159,'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.dat.gz',now(),now(),'UniProtParser'); + +INSERT INTO source_url (source_id, species_id, url, checksum, file_modified_date, upload_date, parser) VALUES (3000, 7159, 'ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot_varsplic.fasta.gz', '', now(), now(), "UniProtVarSplicParser"); + +# Interpro +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1300,7159,'ftp://ftp.ebi.ac.uk/pub/databases/interpro/interpro.xml.gz',now(),now(),'InterproParser'); + +# Unigene +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (6,7159,'ftp://ftp.ncbi.nih.gov/repository/UniGene/Aedes_aegypti/Aae.seq.uniq.gz ftp://ftp.ncbi.nih.gov/repository/UniGene/Aedes_aegypti/Aae.data.gz',now(),now(),'UniGeneParser'); + +# GO +INSERT INTO source_url (source_id, species_id, url, file_modified_date, upload_date, parser) VALUES (1070, 7159,'ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/UNIPROT/gene_association.goa_uniprot.gz', now(), now(), "GOParser"); + +# -------------------------------------------------------------------------------- + #### Cow